X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=build.xml;h=57cd9d2c55c7731e20704ef1e0466642130ce6d7;hb=d645ed1944459b6271dea2a8511a1e0f4f997530;hp=43bab6fac3af8b1a2d50f6d51f6ebfdd847ae7ef;hpb=d7ed5404a518dfe4a3699ac299b5e644b27dd05e;p=jalview.git

diff --git a/build.xml b/build.xml
index 43bab6f..57cd9d2 100755
--- a/build.xml
+++ b/build.xml
@@ -421,13 +421,11 @@
         </information>
         <resources>
           <j2se version="${j2sev}" initial_heap_size="${inih}" max_heap_size="${maxh}" />
+          <jar main="true" href="jalview.jar"/>
           <fileset dir="${packageDir}">
-            <include name="jalview.jar" />
-          </fileset>
-          <fileset dir="${packageDir}">
+            <exclude name="jalview.jar" />
             <include name="*.jar" />
             <include name="*_*.jar" />
-            <exclude name="jalview.jar" />
             <exclude name="*jnilib.jar" />
           </fileset>
           <property name="jalview.version" value="${JALVIEW_VERSION}" />
@@ -570,7 +568,7 @@
 
 <target name="compileApplet" depends="init,clean">
   <mkdir dir="${outputDir}" />
-  <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="jalviewlite.deps" includes="jalview/appletgui/**" excludes="ext/**,gui/**,jbgui/**,MCview/**,org/**,vamsas/**,jalview/ext/rbvi/**,jalview/ext/paradise/**" />
+  <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="jalviewlite.deps" includes="jalview/appletgui/**" excludes="ext/**,gui/**,jbgui/**,MCview/**,org/**,vamsas/**,jalview/ext/rbvi/**,jalview/ext/paradise/**,jalview/ext/ensembl/**,jalview/ext/so" />
 </target>
 
 <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
@@ -613,7 +611,9 @@
     <pathelement location="appletlib/${jsoup}" />
     <pathelement location="appletlib/${jsonSimple}" />
     <pathelement location="appletlib/${javaJson}" />
-    <pathelement location="appletlib/plugin.jar" />
+ 	<fileset dir="${java.home}/lib">
+        <include name="plugin.jar" />
+    </fileset>
   </path>
   <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />