X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=build.xml;h=6cfaf4e5de36fde1f3de79de25b578fd5f467cac;hb=refs%2Ftags%2FRelease_2_7;hp=faa953de81a97e877c20e49379469f2972960559;hpb=6df796e6c9f42b5986443fd517765d1f84973f4c;p=jalview.git

diff --git a/build.xml b/build.xml
index faa953d..6cfaf4e 100755
--- a/build.xml
+++ b/build.xml
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -88,6 +88,8 @@
 		<!-- Don't change anything below here unless you know what you are doing! -->
 		<!-- Url path for WebStart in JNLP file -->
 		<property name="WebStartLocation" value="http://www.jalview.org/webstart" />
+		<!-- J2SE version needed for webstart launch -->
+		<property name="j2sev" value="1.6+"/>
 		<!-- build directory configuration -->
 		<property name="libDir" value="lib" />
 		<property name="resourceDir" value="resources" />
@@ -234,6 +236,45 @@
 
 		<!--    codebase="http://www.jalview.org/jalview/webstart" -->
 		<!-- href="jalview.jnlp" prevent hard-wired pickup of jnlp in certain javaws versions -->
+		<jnlp toFile="${packageDir}/jalview_noa.jnlp" codebase="${WebStartLocation}">
+			<information>
+				<title>Jalview</title>
+				<vendor>The Barton Group</vendor>
+				<homepage href="http://www.jalview.org" />
+				<description>Jalview Multiple Alignment Editor</description>
+				<description kind="short">Jalview</description>
+				<icon href="logo_big.gif" />
+				<offline_allowed />
+				<!--
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>-->
+			</information>
+			<resources>
+				<j2se version="${j2sev}" initial_heap_size="10M"  />
+				<fileset dir="${packageDir}">
+					<include name="jalview.jar" />
+				</fileset>
+				<fileset dir="${packageDir}">
+					<include name="*.jar" />
+					<include name="*_*.jar" />
+					<exclude name="jalview.jar" />
+				</fileset>
+				<property name="jalview.version" value="${JALVIEW_VERSION}" />
+			</resources>
+			<application_desc main_class="jalview.bin.Jalview">
+			</application_desc>
+			<security>
+				<all_permissions />
+			</security>
+		</jnlp>
 		<jnlp toFile="${packageDir}/jalview.jnlp" codebase="${WebStartLocation}">
 			<information>
 				<title>Jalview</title>
@@ -243,8 +284,47 @@
 				<description kind="short">Jalview</description>
 				<icon href="logo_big.gif" />
 				<offline_allowed />
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>
+			</information>
+			<resources>
+				<j2se version="${j2sev}" initial_heap_size="10M"/>
+				<fileset dir="${packageDir}">
+					<include name="jalview.jar" />
+				</fileset>
+				<fileset dir="${packageDir}">
+					<include name="*.jar" />
+					<include name="*_*.jar" />
+					<exclude name="jalview.jar" />
+				</fileset>
+				<property name="jalview.version" value="${JALVIEW_VERSION}" />
+			</resources>
+			<application_desc main_class="jalview.bin.Jalview">
+			</application_desc>
+			<security>
+				<all_permissions />
+			</security>
+		</jnlp>
+		
+		<jnlp toFile="${packageDir}/jalview_noa_1G.jnlp" codebase="${WebStartLocation}">
+			<information>
+				<title>Jalview</title>
+				<vendor>The Barton Group</vendor>
+				<homepage href="http://www.jalview.org" />
+				<description>Jalview Multiple Alignment Editor</description>
+				<description kind="short">Jalview</description>
+				<icon href="logo_big.gif" />
+				<offline_allowed />
 				<!--
-	<association mime-type="application-x/ext-file" extensions="fa"/>
+				<association mime-type="application-x/ext-file" extensions="fa"/>
         <association mime-type="application-x/ext-file" extensions="fasta"/>
         <association mime-type="application-x/ext-file" extensions="fastq"/>
         <association mime-type="application-x/ext-file" extensions="blc"/>
@@ -253,10 +333,10 @@
         <association mime-type="application-x/ext-file" extensions="aln"/>
         <association mime-type="application-x/ext-file" extensions="pir"/>
         <association mime-type="application-x/ext-file" extensions="amsa"/>
-	-->
+        <association mime-type="application-x/ext-file" extensions="stk"/>-->
 			</information>
 			<resources>
-				<j2se version="1.5+" initial_heap_size="10M" />
+				<j2se version="${j2sev}" initial_heap_size="128M" max_heap_size="512M" />
 				<fileset dir="${packageDir}">
 					<include name="jalview.jar" />
 				</fileset>
@@ -273,7 +353,6 @@
 				<all_permissions />
 			</security>
 		</jnlp>
-		<!-- the rest of these jnlp tasks are copy and pastes of the above but with different Vm args -->
 		<jnlp toFile="${packageDir}/jalview_1G.jnlp" codebase="${WebStartLocation}">
 			<information>
 				<title>Jalview</title>
@@ -283,20 +362,19 @@
 				<description kind="short">Jalview</description>
 				<icon href="logo_big.gif" />
 				<offline_allowed />
-				<!--
-		<association mime-type="application-x/ext-file" extensions="fa"/>
-	        <association mime-type="application-x/ext-file" extensions="fasta"/>
-	        <association mime-type="application-x/ext-file" extensions="fastq"/>
-	        <association mime-type="application-x/ext-file" extensions="blc"/>
-	        <association mime-type="application-x/ext-file" extensions="msf"/>
-	        <association mime-type="application-x/ext-file" extensions="pfam"/>
-	        <association mime-type="application-x/ext-file" extensions="aln"/>
-	        <association mime-type="application-x/ext-file" extensions="pir"/>
-	        <association mime-type="application-x/ext-file" extensions="amsa"/>
-		-->
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>
 			</information>
 			<resources>
-				<j2se version="1.5+" initial_heap_size="64M" max_heap_size="512M" />
+				<j2se version="${j2sev}" initial_heap_size="128M" max_heap_size="512M" />
 				<fileset dir="${packageDir}">
 					<include name="jalview.jar" />
 				</fileset>
@@ -313,7 +391,7 @@
 				<all_permissions />
 			</security>
 		</jnlp>
-		<jnlp toFile="${packageDir}/jalview_2G.jnlp" codebase="${WebStartLocation}">
+		<jnlp toFile="${packageDir}/jalview_noac_2G.jnlp" codebase="${WebStartLocation}">
 			<information>
 				<title>Jalview</title>
 				<vendor>The Barton Group</vendor>
@@ -323,19 +401,58 @@
 				<icon href="logo_big.gif" />
 				<offline_allowed />
 				<!--
-			<association mime-type="application-x/ext-file" extensions="fa"/>
-		        <association mime-type="application-x/ext-file" extensions="fasta"/>
-		        <association mime-type="application-x/ext-file" extensions="fastq"/>
-		        <association mime-type="application-x/ext-file" extensions="blc"/>
-		        <association mime-type="application-x/ext-file" extensions="msf"/>
-		        <association mime-type="application-x/ext-file" extensions="pfam"/>
-		        <association mime-type="application-x/ext-file" extensions="aln"/>
-		        <association mime-type="application-x/ext-file" extensions="pir"/>
-		        <association mime-type="application-x/ext-file" extensions="amsa"/>
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>
 			-->
 			</information>
 			<resources>
-				<j2se version="1.5+" initial_heap_size="256M" max_heap_size="1024M" />
+				<j2se version="${j2sev}" initial_heap_size="256M" max_heap_size="1024M" />
+				<fileset dir="${packageDir}">
+					<include name="jalview.jar" />
+				</fileset>
+				<fileset dir="${packageDir}">
+					<include name="*.jar" />
+					<include name="*_*.jar" />
+					<exclude name="jalview.jar" />
+				</fileset>
+				<property name="jalview.version" value="${JALVIEW_VERSION}" />
+			</resources>
+			<application_desc main_class="jalview.bin.Jalview">
+			</application_desc>
+			<security>
+				<all_permissions />
+			</security>
+		</jnlp>
+		<jnlp toFile="${packageDir}/jalview_2G.jnlp" codebase="${WebStartLocation}">
+			<information>
+				<title>Jalview</title>
+				<vendor>The Barton Group</vendor>
+				<homepage href="http://www.jalview.org" />
+				<description>Jalview Multiple Alignment Editor</description>
+				<description kind="short">Jalview</description>
+				<icon href="logo_big.gif" />
+				<offline_allowed />
+				<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
+        <association mime-type="application-x/ext-file" extensions="stk"/>
+			</information>
+			<resources>
+				<j2se version="${j2sev}" initial_heap_size="256M" max_heap_size="1024M" />
 				<fileset dir="${packageDir}">
 					<include name="jalview.jar" />
 				</fileset>
@@ -573,6 +690,8 @@
 	  <copy todir="${packageDir}/examples">
 	  <fileset dir="examples">
 	  	<include name="**/*"/>
+	  	<include name="javascript/*"/>
+      <include name="jmol/*"/>
 	  </fileset>
 	  	<fileset dir=".">
 	  	<include name="jalviewApplet.jar"/>