X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=conf%2Fsettings%2FAAConPresets.xml;h=f2e3cde3bf52fdf2680ed2cba4c53ce9a8d62ae8;hb=14c406769ac5cd4acfbc4819bb3dc967a51e4bb6;hp=cdf8d3765c2d77bcf791302d8c809184fc564a69;hpb=fab6bab770b548a0c99ed6f5dfb46f5aa99f67c7;p=jabaws.git

diff --git a/conf/settings/AAConPresets.xml b/conf/settings/AAConPresets.xml
index cdf8d37..f2e3cde 100644
--- a/conf/settings/AAConPresets.xml
+++ b/conf/settings/AAConPresets.xml
@@ -1,30 +1,25 @@
 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>
 <presets>
- <runnerClassName>compbio.runner.conservation.AACon</runnerClassName>
+<runnerClassName>compbio.runner.conservation.AACon</runnerClassName>
 	<preset>
 		<name>Quick conservation</name>
 		<description>Collection of fast conservation methods</description>
 		<optlist>
-			<option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON</option>
+			<option>-m=KABAT</option><option>-m=JORES</option><option>-m=SCHNEIDER</option><option>-m=SHENKIN</option><option>-m=GERSTEIN</option><option>-m=TAYLOR_GAPS</option><option>-m=TAYLOR_NO_GAPS</option><option>-m=ZVELIBIL</option><option>-m=ARMON</option><option>-m=THOMPSON</option><option>-m=NOT_LANCET</option><option>-m=MIRNY</option><option>-m=WILLIAMSON</option>
 		</optlist>
 	</preset>
 	<preset>
 		<name>Slow conservation</name>
 		<description>Collection of most expensive (slow) conservation methods</description>
 		<optlist>
-			<option>-m=LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>
+			<option>-m=LANDGRAF</option><option>-m=KARLIN</option><option>-m=SANDER</option><option>-m=VALDAR</option><option>-m=SMERFS</option>
 		</optlist>
 	</preset>
 	<preset>
 		<name>Complete conservation</name>
 		<description>Calculate conservation with all supported methods</description>
 		<optlist>
-			<option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON,LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>
+			<option>-m=KABAT</option><option>-m=JORES</option><option>-m=SCHNEIDER</option><option>-m=SHENKIN</option><option>-m=GERSTEIN</option><option>-m=TAYLOR_GAPS</option><option>-m=TAYLOR_NO_GAPS</option><option>-m=ZVELIBIL</option><option>-m=ARMON</option><option>-m=THOMPSON</option><option>-m=NOT_LANCET</option><option>-m=MIRNY</option><option>-m=WILLIAMSON</option><option>-m=LANDGRAF</option><option>-m=KARLIN</option><option>-m=SANDER</option><option>-m=VALDAR</option><option>-m=SMERFS</option>
 		</optlist>
 	</preset>
 </presets>
-
-
-
- 
-