X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=datadb%2Fcompbio%2Fcassandra%2FJpredParserLocalFile.java;h=f48178c9f862bd961270425e3c248258335098ed;hb=43a2a57fb10f89d0130960f43d136cff1fd56c59;hp=4b254ae98d04e1c314d9d79f6dc32d90e32b1f5a;hpb=91de317f0e7f8697c3b2d036c7f22a5d6df6cabc;p=proteocache.git

diff --git a/datadb/compbio/cassandra/JpredParserLocalFile.java b/datadb/compbio/cassandra/JpredParserLocalFile.java
index 4b254ae..f48178c 100644
--- a/datadb/compbio/cassandra/JpredParserLocalFile.java
+++ b/datadb/compbio/cassandra/JpredParserLocalFile.java
@@ -15,19 +15,22 @@ import java.util.Calendar;
 import java.util.Date;
 import java.util.List;
 
+import compbio.data.sequence.FastaReader;
+import compbio.data.sequence.FastaSequence;
+
 public class JpredParserLocalFile implements JpredParser {
-	private CassandraNativeConnector cc = new CassandraNativeConnector();
+	private CassandraWriter cw = new CassandraWriter();
 	private String dirprefix;
 
 	public void setSource(String newsourceprefix) {
 		this.dirprefix = newsourceprefix;
 	}
 
-	JpredParserLocalFile() {
+	public JpredParserLocalFile() {
 		this.dirprefix = "/home/asherstnev/Projects/Java.projects/proteocache/data_stress_test/data.dat";
 	}
 
-	JpredParserLocalFile(String sourceurl) {
+	public JpredParserLocalFile(String sourceurl) {
 		this.dirprefix = sourceurl;
 	}
 
@@ -103,7 +106,7 @@ public class JpredParserLocalFile implements JpredParser {
 							} catch (ParseException e) {
 								e.printStackTrace();
 							}
-							countinsertions += cc.FormQueryTables(insertdate, starttime, finishtime, ip, id, "OK", "OK", newprotein, seqs);
+							//countinsertions += cw.FormQueryTables(insertdate, starttime, finishtime, ip, id, "OK", "OK", newprotein, seqs);
 						}
 						fr.close();
 					} catch (IOException e) {