X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=examples%2FappletParameters.html;h=8daa4ee59a71be6659de2609bfc644511716871e;hb=4574c3caf9bbd27eed97f18827a2343f35fc940e;hp=a0f25d4aa7d8fa340e829d05204990aaeb3a326e;hpb=0f427c676c3380fd8fe1856c9eff8b653f3e4815;p=jalview.git
diff --git a/examples/appletParameters.html b/examples/appletParameters.html
index a0f25d4..8daa4ee 100644
--- a/examples/appletParameters.html
+++ b/examples/appletParameters.html
@@ -17,6 +17,9 @@
* The Jalview Authors are detailed in the 'AUTHORS' file.
-->
+
+
Click here to view decorated page
+
JalviewLite Applet Parameter Documentation
@@ -43,11 +46,23 @@ the applet can be interacted with via its
fileName |
The file to open, must be on same server as the applet. |
-
- file2 |
- fileName |
- A second file to open. If one file is nucleotide and the other peptide, and at least one peptide sequence
- is the translation of one of the nucleotide sequences, then alignments will be displayed linked in a split frame (since 2.9). |
+
+ file2 |
+ fileName |
+ A second file to open and show linked in a Split Frame
+ view. If one file is nucleotide and the other peptide, and at
+ least one peptide sequence matches the translation of one of the
+ nucleotide sequences, then gaps will be inserted into the
+ sequences in this file to match the aligned columns for
+ corresponding positions in the primary alignment file. This
+ parameter is ignored if enableSplitFrame is set to false (since
+ 2.9).
+ |
+
+
+ enableSplitFrame |
+ true or false (default true) |
+ Enable or disable the display of linked cDNA and Protein alignments in a split frame (since 2.9). |
sequence1,
@@ -352,6 +367,13 @@ the applet can be interacted with via its
<param name="embedded"
value="true">
+
+ **NEW FEATURES** in Jalview 2.9
+
+ - Split Views for cDNA and Protein alignments
Specify second alignment with 'file2' parameter, and set cDNA/Protein column scaling with scaleProteinAsCdna
+
+
+
**NEW FEATURES** in Jalview 2.8
- Normalised sequence logo display
|