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- JalviewLite Examples -
- Applet Parameters -
- Javascript API -
- in-page API demo -
- Two JalviewLites demo -
- Sequence And Structure demo -
Try the unsigned applet demos +
Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar
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JalviewLite is a web based version of Jalview, which runs as a Java applet in or on a web page. It's one of the easiest ways of providing an interactive - display for precalculated alignments, features and annotations files. - It lacks some functionality available in the Jalview Desktop, however, such - as making images, saving files, and running web service jobs. This is mostly due to security - restrictions imposed on applets.
-For more information on how to use the applet in your - website, see full list of applet - parameters.
-Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser.
- Ferredoxins, chloroplast precursor related UniRef50
- cluster
- (15 sequences x 150 residues)
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For more JalviewLite examples, follow the links below. -
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- JalviewLite embedded in the web page -
- use Javascript to control and get data from JalviewLite -
- use Javascript to make two jalviewLite instances talk to each other -
- configure JalviewLite to talk to a Jmol applet on the page. -
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JalviewLite Button Examples
+Try out JalviewLite by pressing one of the buttons below.+ For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left. +
+
Ferredoxins, chloroplast precursor related UniRef50 + cluster
+(15 sequences x 150 residues) + +
| + + | +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment. | +
| + | +Displays a features file on the alignment | +
| + | +Associates PDB file 1GAQ with sequence + FER1_MAIZE | +
| + | +Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence | +
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RF00031 RFAM Alignment with per sequence secondary + structure
+ +| + | +Displays an RFAM RNA fold family with + secondary structure annotation | +
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Linked amino acid and cDNA alignments for homologous proteins
+ +| + | +Displays a split window view of protein and its related cDNA | +
Copyright all rights reserved 2012
Published under CC-SA 3.0
If you use Jalview in your work, please cite this publication: @@ -334,11 +359,10 @@ If you use Jalview in your work, please cite this publication:
Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009) "Jalview Version 2 - a multiple sequence alignment editor and analysis workbench" -Bioinformatics 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033 +Bioinformatics 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033