X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=examples%2Ftest_fab41.result%2Fargfile.txt;h=52d68eec1fc1a994bb6975fa48f962f38dbd0a5b;hb=9ed332c40312fc75fb64953066591f9c311c7907;hp=ed450ddfa4c48601577b32214afa55a35ecf529f;hpb=d42b7588a34477b24ce97ba75788536e74e6cf86;p=jalview.git

diff --git a/examples/test_fab41.result/argfile.txt b/examples/test_fab41.result/argfile.txt
index ed450dd..52d68ee 100644
--- a/examples/test_fab41.result/argfile.txt
+++ b/examples/test_fab41.result/argfile.txt
@@ -1,14 +1,24 @@
+--debug
+--nonews
+--nosplash
+--noannotation
 --substitutions
 --open={argfiledirname}/sample.a2m
 --colour=gecos:flower
---structure={argfiledirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
---paematrix=[label=pAE R1-M3]{argfiledirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
---structure={argfiledirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
---paematrix=[label=pAE R2-M4]{argfiledirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
---structure={argfiledirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
---paematrix=[label=pAE R3-M2]{argfiledirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
---structure={argfiledirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
---paematrix=[label=pAE R4-M5]{argfiledirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
---structure={argfiledirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
---paematrix=[label=pAE R5-M1]{argfiledirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
+--structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
+--paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
+--tempfac=plddt
+--structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
+--paematrix={dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
+--tempfac=plddt
+--structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
+--paematrix={dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
+--tempfac=plddt
+--structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
+--paematrix={dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
+--tempfac=plddt
+--structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
+--tempfac=plddt
+--paematrix={dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
 --image={dirname}/{basename}.html
+#--headless