X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fmsa_compactor.java;h=33254a57efd31db447a697e38cdd51c7c06272b0;hb=90e29ddfe15f6c44f3e3ba419a67c3e267e279bd;hp=3291d6531c842d65f4c62d70a9702e3cfcc63bf0;hpb=4d7228400f44ee88136f3d70d9455b1b1d95de27;p=jalview.git

diff --git a/forester/java/src/org/forester/application/msa_compactor.java b/forester/java/src/org/forester/application/msa_compactor.java
index 3291d65..33254a5 100644
--- a/forester/java/src/org/forester/application/msa_compactor.java
+++ b/forester/java/src/org/forester/application/msa_compactor.java
@@ -28,7 +28,7 @@ public class msa_compactor {
     final static private String PRG_NAME                               = "msa_compactor";
     final static private String PRG_DESC                               = "multiple sequnce aligment compactor";
     final static private String PRG_VERSION                            = "0.01";
-    final static private String PRG_DATE                               = "140221";
+    final static private String PRG_DATE                               = "140314";
     final static private String E_MAIL                                 = "phylosoft@gmail.com";
     final static private String WWW                                    = "https://sites.google.com/site/cmzmasek/home/software/forester";
 
@@ -128,7 +128,8 @@ public class msa_compactor {
         System.out.println();
         System.out.println( " options: " );
         System.out.println();
-        System.out.println( "   -" + REMOVE_WORST_OFFENDERS_OPTION + "=<integer>: step size (msa columns)" );
+        System.out.println( "   -" + REMOVE_WORST_OFFENDERS_OPTION + "=<integer>  number of sequences to remove" );
+        System.out.println( "   -" + REALIGN_OPTION + " to realign using " );
         System.out.println();
         System.out.println();
         System.out.println();