X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Farchaeopteryx%2FAptxUtil.java;h=e35596765ffbf79ac368e1f9fd7846f21eded4d1;hb=7ad84913635263ddc191fcbebd8a9bd46a9ac7e3;hp=41b7ce44cb88ea911d7e68a5b8a6929620cfe330;hpb=fd4ebf6cb139b472664fee8cb9e74af3933a4ae5;p=jalview.git diff --git a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java index 41b7ce4..e355967 100644 --- a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java +++ b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java @@ -62,7 +62,7 @@ import javax.swing.JApplet; import javax.swing.JOptionPane; import javax.swing.text.MaskFormatter; -import org.forester.analysis.AncestralTaxonomyInference; +import org.forester.analysis.TaxonomyDataManager; import org.forester.io.parsers.PhylogenyParser; import org.forester.io.parsers.phyloxml.PhyloXmlUtil; import org.forester.io.parsers.tol.TolParser; @@ -82,7 +82,7 @@ import org.forester.phylogeny.iterators.PreorderTreeIterator; import org.forester.util.AsciiHistogram; import org.forester.util.DescriptiveStatistics; import org.forester.util.ForesterUtil; -import org.forester.ws.uniprot.UniProtTaxonomy; +import org.forester.ws.seqdb.UniProtTaxonomy; public final class AptxUtil { @@ -464,7 +464,7 @@ public final class AptxUtil { else { UniProtTaxonomy up = null; try { - up = AncestralTaxonomyInference.obtainUniProtTaxonomy( temp_tax, null, null ); + up = TaxonomyDataManager.obtainUniProtTaxonomy( temp_tax, null, null ); } catch ( final Exception e ) { e.printStackTrace();