X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Farchaeopteryx%2Ftools%2FInferenceManager.java;h=30db1768a243ae93dfe152bcb505a354b077b670;hb=891cca0970ffc3f1091b405164af423353a54bea;hp=24ec184e5fa0c4db9676bcbc974f96721c38eba6;hpb=72c535142a5e6b0da9c7edb2f605eb835b43e6fb;p=jalview.git

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/InferenceManager.java b/forester/java/src/org/forester/archaeopteryx/tools/InferenceManager.java
index 24ec184..30db176 100644
--- a/forester/java/src/org/forester/archaeopteryx/tools/InferenceManager.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/InferenceManager.java
@@ -12,7 +12,6 @@ public final class InferenceManager {
     private final File          _path_to_local_mafft;
     private final File          _path_to_local_fastme;
     private final File          _path_to_local_raxml;
-    private final File          _path_to_local_clustalo;
 
     public static InferenceManager createInstance( final Configuration c ) {
         return new InferenceManager( c.getpathToLocalMafft(),
@@ -22,7 +21,7 @@ public final class InferenceManager {
     }
 
     public boolean canDoMsa() {
-        return ( getPathToLocalMafft() != null ) || ( getPathToLocalClustalo() != null );
+        return ( getPathToLocalMafft() != null );
     }
 
     public File getPathToLocalMafft() {
@@ -37,10 +36,6 @@ public final class InferenceManager {
         return _path_to_local_raxml;
     }
 
-    public File getPathToLocalClustalo() {
-        return _path_to_local_clustalo;
-    }
-
     private final static File createLocalPath( final File path, final String name ) {
         if ( ( path != null ) && path.canExecute() && !path.isDirectory() ) {
             return path;
@@ -77,6 +72,5 @@ public final class InferenceManager {
         _path_to_local_mafft = createLocalPath( path_to_local_mafft, "mafft" );
         _path_to_local_fastme = createLocalPath( path_to_local_fastme, "fastme" );
         _path_to_local_raxml = createLocalPath( path_to_local_raxml, "raxml" );
-        _path_to_local_clustalo = createLocalPath( path_to_local_clustalo, "clustalo" );
     }
 }