X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Farchaeopteryx%2Ftools%2FPhylogeneticInferrer.java;h=8b8964628d2cd77ae58887242f40d165ce118c38;hb=bdf2d2a11d720d6457f52866af7ff909afe98db4;hp=f972745c8fa79d3cd18f32e8d26137eba3a411c9;hpb=db8b10baefc3e1b5fee9b8192657ecc97ca5b86d;p=jalview.git

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java b/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java
index f972745..8b89646 100644
--- a/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java
@@ -144,6 +144,7 @@ public class PhylogeneticInferrer extends RunnableProcess {
         }
         final NeighborJoiningF nj = NeighborJoiningF.createInstance( false, 5 );
         final Phylogeny phy = nj.execute( m );
+        PhylogenyMethods.addMolecularSeqsToTree( phy, msa );
         PhylogenyMethods.extractFastaInformation( phy );
         return phy;
     }