X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fdevelopment%2FDevelopmentTools.java;h=9c26d2cf8c4ba9ec0c68ab15eaf43b7c15121063;hb=10297bd8b8a4b4ab198a17a42fc6ff24ae2ed49b;hp=5a6a8db9947ddec8a6043bcd59837a99e4e91c8f;hpb=03e51d179caedf757b09e2872f9500318bd85a53;p=jalview.git diff --git a/forester/java/src/org/forester/development/DevelopmentTools.java b/forester/java/src/org/forester/development/DevelopmentTools.java index 5a6a8db..9c26d2c 100644 --- a/forester/java/src/org/forester/development/DevelopmentTools.java +++ b/forester/java/src/org/forester/development/DevelopmentTools.java @@ -21,7 +21,7 @@ // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com -// WWW: www.phylosoft.org/forester +// WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.development; @@ -36,7 +36,7 @@ public final class DevelopmentTools { /** * Creates a completely unbalanced Phylogeny with i external nodes. - * + * * @return a newly created unbalanced Phylogeny */ // public static Phylogeny createUnbalancedTree( int i ) { @@ -46,7 +46,7 @@ public final class DevelopmentTools { // try { // PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance(); // t1 = factory.create( ":S=", new SimpleNHXParser() ); - // + // // t1.setRooted( true ); // // for ( int j = 1; j < i; ++j ) { @@ -71,7 +71,7 @@ public final class DevelopmentTools { /** * Creates a completely balanced rooted phylogeny with a given number of levels and * children per node. - * + * * @param levels * @param children_per_node * @return a completely balanced rooted phylogeny @@ -165,7 +165,7 @@ public final class DevelopmentTools { /** * Sets the species names of the external Nodes of Phylogeny t to a random * positive integer number between (and including) min and max. - * + * * @param t * whose external species names are to be randomized * @param min