X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=forester%2Fsh%2Fx_msa_pro.sh;h=9bfc92cc5bcf9bc67155df7f5fc4a029c77536ad;hb=8807e41589f074b8fbf0db9d0fb18c36804aa172;hp=57544c146f0f9b2c13b2843b0183556b324bd208;hpb=9df33ab28af374961a4f1546fe14001b09593e74;p=jalview.git

diff --git a/forester/sh/x_msa_pro.sh b/forester/sh/x_msa_pro.sh
index 57544c1..9bfc92c 100644
--- a/forester/sh/x_msa_pro.sh
+++ b/forester/sh/x_msa_pro.sh
@@ -1,4 +1,4 @@
-re="(.+)_mafft_1000_g\.aln"
+re="(.+)_mafft_1000_l\.fasta"
 for i in * 
 do
     if test -f "$i" 
@@ -7,7 +7,7 @@ do
         then
             name=${BASH_REMATCH[1]}
             echo $name
-            ruby /home/zma/git/forester/forester/ruby/evoruby/exe/msa_pro.rb -i=f -o=p -d -c -rr=0.5 -rsl=20 $i ${name}_mafft_1000_g_05_20
+            ruby /home/zma/git/forester/forester/ruby/evoruby/exe/msa_pro.rb -i=f -o=p -d -c -rr=0.5 -rsl=20 $i ${name}_mafft_1000_l_05_20
             rc=$?
             if [[ $rc != 0 ]]
             then