X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhelp%2Fhtml%2Fcalculations%2Fpca.html;h=3bf21cbe871d66f2d28a1a86a7afd912c20dc2b5;hb=56ce5cb6fd0b54f831cf35859886cd69a7f522a3;hp=3529cae8f9159e0691061cdbfeddbef0b2eee416;hpb=44d68d55d9c85bf7b28853feeebc4b901c4a8392;p=jalview.git diff --git a/help/help/html/calculations/pca.html b/help/help/html/calculations/pca.html index 3529cae..3bf21cb 100755 --- a/help/help/html/calculations/pca.html +++ b/help/help/html/calculations/pca.html @@ -70,7 +70,7 @@ nucleotide substitution matrix, or by sequence percentage identity, or sequence feature similarity.
-The PCA Viewer
@@ -84,7 +84,9 @@ towards the front of the view.The 3d view can be rotated by dragging the mouse with the left - mouse button pressed. The view can also be zoomed in and out with + mouse button pressed, or with the arrow + keys when SHIFT is pressed. The + view can also be zoomed in and out with the up and down arrow keys (and the roll bar of the mouse if present). Labels will be shown for each sequence if the entry in the View menu is checked, and the plot background colour @@ -122,7 +124,7 @@ left-clicking and dragging the mouse over the display. -->
Initially, the display shows the first three components of the similarity space, but any eigenvector can be used by changing the - selected dimension for the x, y, or z axis through each ones menu + selected dimension for the x, y, or z axis through each one's menu located below the 3d display. The Reset button will reset axis and rotation settings to their defaults.
@@ -131,7 +133,7 @@ left-clicking and dragging the mouse over the display. --> The output of points and transformed point coordinates was added to the Jalview desktop in v2.7. The Reset button and Change Parameters menu were added in Jalview 2.8. Support - for PAM250 based PCA was added in Jalview 2.8.1. + for PAM250 based PCA was added in Jalview 2.8.1.In Jalview 2.11, support for saving and restoring PCAs in Project files was added, and the Change parameters menu removed.Reproducing PCA calculations performed with older