X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fclarguments.html;h=c0f4c42d428855c0276075006c08561ef50dfe20;hb=2319ef1a410ce35bf2ef1800fd0be4e779ee44eb;hp=0d800cf6a3dc6b3560b1622b7bd15e58ccc1c9c8;hpb=1ceb01789338f289cee6e2ae938e971ecc2c0191;p=jalview.git
diff --git a/help/help/html/features/clarguments.html b/help/help/html/features/clarguments.html
index 0d800cf..c0f4c42 100644
--- a/help/help/html/features/clarguments.html
+++ b/help/help/html/features/clarguments.html
@@ -34,6 +34,11 @@
parameters, then include it at the beginning of the command line to
ensure they are processed before any remaining arguments.
+ Typical command line execution follows the following pattern:
+
+ jalview -open <Alignment File/URL> [additional import arguments] [export arguments] ++
-nodisplay |
@@ -41,13 +46,27 @@
User Interface. (automatically disables questionnaire, version
and usage stats checks)
|
-nowebservicediscovery |
+ Do not query configured servers to
+ discover web services (Since 2.11.2.0) |
+
-open FILE/URL |
+ Specify the alignment file to
+ open or process by providing additional arguments. |
+
-props FILE/URL |
Use the given Jalview properties
file instead of users default. |
-setprop PROPERTY=value |
+ (JalviewJS ONLY) sets the given
+ property to the given value |
+
-features FILE/URL |
@@ -77,6 +96,14 @@ File description. |
+ -no-annotation
+ |
+ Do not display annotation below the alignment. + | +
-tree FILE/URL
|