X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fclarguments.html;h=c0f4c42d428855c0276075006c08561ef50dfe20;hb=8e62def6cf40cdd19e1c15ac2ed7e9f3d8b3aa54;hp=369c56549eeb2e800d98dcfc17cc2a9bdcf0f99a;hpb=6be53c5baa4a130d2dfa166d990e6183c0e6b237;p=jalview.git
diff --git a/help/help/html/features/clarguments.html b/help/help/html/features/clarguments.html
index 369c565..c0f4c42 100644
--- a/help/help/html/features/clarguments.html
+++ b/help/help/html/features/clarguments.html
@@ -34,6 +34,11 @@
parameters, then include it at the beginning of the command line to
ensure they are processed before any remaining arguments.
+ Typical command line execution follows the following pattern:
+
+ jalview -open <Alignment File/URL> [additional import arguments] [export arguments] ++
-nodisplay |
@@ -41,13 +46,27 @@
User Interface. (automatically disables questionnaire, version
and usage stats checks)
||
-nowebservicediscovery |
+ Do not query configured servers to
+ discover web services (Since 2.11.2.0) |
+ |
-open FILE/URL |
+ Specify the alignment file to
+ open or process by providing additional arguments. |
+ |
-props FILE/URL |
Use the given Jalview properties
file instead of users default. |
|
-setprop PROPERTY=value |
+ (JalviewJS ONLY) sets the given
+ property to the given value |
+ |
-features FILE/URL |
@@ -77,6 +96,14 @@ File description. |
|
+ -no-annotation
+ |
+ Do not display annotation below the alignment. + | +|
-tree FILE/URL
@@ -227,7 +254,7 @@
| ||
-jvmmempc=PERCENT |
- Standalone executable jar only.
+ Only available with standalone executable jar or jalview.bin.Launcher.
Limit maximum heap size (memory) to PERCENT% of total physical memory detected.
This defaults to 90 if total physical memory can be detected.
See Memory usage settings for Jalview for more details.
@@ -236,10 +263,10 @@
| |
-jvmmemmax=MAXMEMORY |
- Standalone executable jar only.
+ Only available with standalone executable jar or jalview.bin.Launcher.
Limit maximum heap size (memory) to MAXMEMORY. MAXMEMORY can be specified in bytes, kilobytes(k), megabytes(m),
gigabytes(g) or if you're lucky enough, terabytes(t).
- This defaults to 32g if total physcial memory can be detected, or to 8g if total physical memory cannot be detected.
+ This defaults to 32g if total physical memory can be detected, or to 8g if total physical memory cannot be detected.
See Memory usage settings for Jalview for more details.
|