X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhelp%2Fhtml%2Freleases.html;h=07ed6e89ca07452bb9ab0cbef0b05164514ea762;hb=221a20bd20c7c038f18b7f341765165e8c80ca01;hp=d4cba2561c716fc28f1cb4f2b24c0994ed667e63;hpb=221d973075512e015f7c13332c77162ea6b5e7bb;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index d4cba25..07ed6e8 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,8 +57,8 @@ li:before {
- 2.11
- 27/06/2019
+ 2.11.0
+ 04/07/2019
|
@@ -98,17 +98,26 @@ li:before {
-
IntervalStoreJ (NCList
- implementation that alows updates) used for Sequence Feature collections
+ implementation that allows updates) used for Sequence Feature collections
-
-
- Sequence features can be filtered and
- shaded according to any associated attributes (e.g. variant
- attributes from VCF file, or key-value pairs imported from
- column 9 of GFF file)
+ Sequence
+ features can be filtered and shaded according to any
+ associated attributes (e.g. variant attributes from VCF
+ file, or key-value pairs imported from column 9 of GFF
+ file)
+
+ -
+ Feature Attributes and shading schemes
+ stored and restored from Jalview Projects
+
+ -
+ Use full Sequence Ontology (via BioJava) to
+ recognise variant features
-
- Show synonymous codon variants on peptide
- sequences
+ Show synonymous codon variants on peptide
+ sequences (also coloured red by default)
-
Popup window to show full report for a selected sequence feature's
@@ -134,7 +143,7 @@ li:before {
Principal Components Analysis results
and Viewer state saved in Jalview Project
- - 'Change parameters' option removed from viewer's
+
- 'Change parameters' option removed from viewer's
drop-down menus
-
Can use shift + arrow keys to rotate PCA image
@@ -195,7 +204,7 @@ li:before {
annotation
-
- Help button on Uniprot and PDB search panels
+ Help button on Uniprot and PDB search panels
-
Cursor changes over draggable box in Overview
@@ -239,24 +248,43 @@ li:before {
Added remarks about transparent rendering effects
not supported in EPS figure export
+ - Typos in documentation for Preferences dialog
Development and Release Processes
-
Build system migrated from Ant to Gradle
- Enhanced checks for missing and duplicated keys in Message bundles
- -
- Eclipse project configuration managed with
- gradle-eclipse
-
- -
- Atlassian Bamboo continuous integration for
- unattended Test Suite execution
+ -
+ Eclipse project configuration managed with
+ gradle-eclipse
+
+ -
+ Atlassian
+ Bamboo continuous integration for unattended Test Suite
+ execution
+
-
Memory test suite to detect leaks in common
- operations
- - More unit test coverage, and minor issues resolved.
- - Developer documentation migrated to markdown (with HTML rendering)
+ operations
+
+ -
+ More unit test coverage, and minor
+ issues resolved.
+
+ -
+ Developer documentation migrated to
+ markdown (with HTML rendering)
+
+ -
+ HelpLinksChecker runs on Windows
+
+ -
+ New URLs for publishing development
+ versions of Jalview
+
+ -
+
-
|
@@ -316,14 +344,19 @@ li:before {
doesn't tell users the invalid URL
- Nonpositional features lose feature group on
- export as Jalview features file
-
-
Tooltips displayed for features filtered by
score from view
+ Sequence Variants retrieved from Ensembl during
+ show cross references or Fetch Database References are shown in
+ red in original view
+
+
+ stop_gained variants not shown correctly on
+ peptide sequence (computed variant shown as p.Res.null)
+
+
'Graduated colour' option not offered for
manually created features (where if feature score is Float.NaN)
@@ -408,20 +441,19 @@ li:before {
shown in complementary view
- stop_gained variants not shown correctly on
- peptide sequence
-
-
Codon consensus incorrectly scaled when shown
without normalisation
- Sequence Details report opens positioned to top
+ Sequence Details report should open positioned at top
of report
Help page can be opened twice
+
+ Fuzzy text in web service status menu on OSX Mojave
+
Editing
-
@@ -442,10 +474,22 @@ li:before {
Structure colours not updated when associated tree
repartitions the alignment view (Regression in 2.10.5)
-
-
- New Known Defects
- Datamodel
+
+ -
+ Sequence.findIndex returns wrong value when
+ sequence's End is greater than its length
+
+ Bugs fixed for Java 11 Support (not yet on
+ general release)
+
+ -
+ Menus work properly in split-screen
+
+ New Known Defects
+
+ - Select columns containing feature by double clicking ignores bounds of an existing selected region
+
-
Codon consensus logo incorrectly scaled in gapped
regions of protein alignment.
@@ -473,14 +517,22 @@ li:before {
not shown as thresholded features in 2.11. To workaround please
create a Score filter instead.
- - Java 11 Specific defects
+
- Cancel on Feature Settings dialog doesn't reset group visibility
+ -
+ F2 doesn't enable/disable keyboard mode in linked CDS/Protein view
+
+ -
+ Closing tree windows with CMD/CTRL-W for
+ alignments with multiple views can close views unexpectedly
+
+
+ Java 11 Specific defects
-
- Jalview Properties file is not sorted alphabetically when saved
-
-
-
-
+ Jalview Properties file is not sorted
+ alphabetically when saved
+
+
|