X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhelp%2Fhtml%2Freleases.html;h=c83741a1082d50a442bb8a250dd0d84aa378bc49;hb=2c75b3d8cee2f17f72496609343a033c7a442a3c;hp=67f6fc12680e56de41a02abc9b507c67ba3a0d0a;hpb=15e2e8eab1a261114f289300880a93cbe3d346cf;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 67f6fc1..c83741a 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,45 +57,66 @@ li:before {
+ 2.11.1.0
- 27/03/2020 |
+ 22/04/2020
-
- Option to show 'virtual' codon features on
- protein (or vice versa)
-
- -
- Option to export virtual features if
- shown
-
- -
- Option to transfer virtual features to
- Chimera
-
-
+ Map
+ 'virtual' codon features shown on protein (or vice versa)
+ for display in alignments, on structure views (including
+ transfer to UCSF chimera), in feature reports and for
+ export.
-
- Feature attributes from VCF files can be exported and re-imported as GFF3 files
+ Feature attributes from VCF files can be
+ exported and re-imported as GFF3 files
-
- Capture VCF "fixed column" values POS,
- ID, QUAL, FILTER as Feature Attributes
+ Capture VCF "fixed column" values
+ POS, ID, QUAL, FILTER as Feature Attributes
-
- More robust VCF numeric data field validation while parsing
+ More robust VCF numeric data field
+ validation while parsing
-
- Feature Settings dialog keeps same screen position if reopened
-
+ Feature Settings dialog keeps same screen
+ position if reopened
+
-
- Font anti-aliasing in alignment views enabled by default
-
+ Feature Settings dialog title includes name
+ of associated view
+
-
- Very long feature descriptions truncated in tooltips and menus
-
+ Font anti-aliasing in alignment views
+ enabled by default
+
+ -
+ Very long feature descriptions truncated in
+ tooltips and menus
+
+ -
+ Warn if Sort by Score or Density attempted
+ with no feature types visible
+
-
- Warn if Sort by Score or Density attempted with no feature types visible
+ Improved support for filtering feature attributes with large integer values
Jalview Installer
@@ -118,6 +139,9 @@ li:before {
-
New point release version scheme - 2.11.1.0
+ -
+ 'Jalview Test' installers/apps for easier access to test-release channel builds
+
Build System
-
@@ -128,14 +152,47 @@ li:before {
report
+ Groovy Scripts
+
+ -
+ exportconsensus.groovy prints a FASTA file
+ to stdout containing the consensus sequence for each
+ alignment in a Jalview session
+
+ -
+ ComputePeptideVariants.groovy to translate
+ genomic sequence_variant annotation from CDS as
+ missense_variant or synonymous_variant on protein products.
+
+
|
-
- ID margins for CDS and Protein views not equal when split frame is first opened
+ Hidden sequence markers still visible when
+ 'Show hidden markers' option is not ticked
+
+ -
+ Hidden sequence markers not shown in EPS and
+ PNG output when 'Automatically set ID width' is set in
+ jalview preferences or properties file
+
+ -
+ Feature Editor dialog can be opened when
+ 'Show Sequence Features' option is not ticked
-
- Sequence position numbers in status bar not correct after editing a sequence's start position
+ Undo 'Null' operation shown after sort by
+ buttons in Feature Settings dialog are clicked when no
+ features are visible
+
+ -
+ ID margins for CDS and Protein views not
+ equal when split frame is first opened
+
+ -
+ Sequence position numbers in status bar not
+ correct after editing a sequence's start position
-
Alignment is misaligned in wrapped mode
@@ -163,34 +220,45 @@ li:before {
IllegalArgumentException in some circumstances
-
- Multiple feature settings dialogs can be opened for a view
+ Multiple feature settings dialogs can be
+ opened for a view
-
- Feature Settings dialog is orphaned if alignment window is closed
+ Feature Settings dialog is orphaned if
+ alignment window is closed
-
Credits missing some authors in Jalview
help documentation for 2.11.0 release
+ -
+ Export of Pfam alignment as Stockholm
+ includes Pfam ID as sequence's accession rather than its
+ Uniprot Accession
+
Java 11 Compatibility issues
-
- OSX - Can't view some search results in PDB/Uniprot search panel
+ OSX - Can't view some search results in
+ PDB/Uniprot search panel
- Installer
+ Installer
- - Jalview should not create file associations for 3D structure files (.pdb, .mmcif. .cif)
+
-
+ Jalview should not create file associations
+ for 3D structure files (.pdb, .mmcif. .cif)
Repository and Source Release
-
- removed obsolete .cvsignore files from repository
+ removed obsolete .cvsignore files from
+ repository
-
- Clover report generation running out of memory
+ Clover report generation running out of
+ memory
-
- New Known Issues
+ New Known Issues
-
OSX - Current working directory not
@@ -203,7 +271,12 @@ li:before {
enabled
-
- Jalview Installation type always reports 'Source' in console output
+ Jalview Installation type always reports
+ 'Source' in console output
+
+ -
+ Test Suite: Certain Functional tests fail on jalview's
+ bamboo server but run fine locally.
|