X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2FhelpTOC.xml;h=c0c7f2c1ee891041df3411d809c6f89eddc7a673;hb=bec15db14ab505ae653c5398ba9b51a6b018947d;hp=c91faffb214360c17a41a318d4a7726f4468b999;hpb=85fb1c79fd82d7eada801624f745635632be8362;p=jalview.git

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index c91faff..c0c7f2c 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -4,9 +4,12 @@
 <tocitem text="Jalview Documentation" target="home" expand="true" >
 	<tocitem text="What's new" target="new" expand="true">
 	  <tocitem text="Multiple Views" target="multipleviews"/>
+	  <tocitem text="New keystrokes and Menus" target="newkeys"/>
 	  <tocitem text="Reload and Save" target="reloadsave"/>
-	  <tocitem text="Editing Sequence Features" target="seqfeatedit"/>
-        </tocitem>
+	  <tocitem text="Creating Sequence Features" target="seqfeatcreat"/>
+	  <tocitem text="Amending or Deleting Sequence Features" target="seqfeatedit"/>
+      <tocitem text="Background Dependent Text Colour" target="backdeptextcol"/>
+          </tocitem>
         <tocitem text="Release History" target="release"/>
         <tocitem text="Editing Alignments" target ="edit"/>	
         <tocitem text="Cursor Mode" target="cursor"/>
@@ -18,7 +21,7 @@
 	<tocitem text="Sequence Features" target="seqfeatures" expand="false">
           <tocitem text="Sequence Feature Settings" target="seqfeatures.settings"/>
           <tocitem text="Sequence Features File" target="features.fileformat"/>
-          <tocitem text="User Defined Sequence Features" target="search"/>
+          <tocitem text="User Defined Sequence Features" target="seqfeatcreat"/>
 		  <tocitem text="Editing Sequence Features" target="seqfeatedit"/>
           <tocitem text="DAS Feature Retrieval" target="das.viewing"/>
 	  <tocitem text="DAS Feature Settings" target="das.settings"/>
@@ -67,8 +70,10 @@
 		<tocitem text="Desktop Window" target="desktopMenu"/>
 		<tocitem text="Alignment Window" target="alMenu">
                 <tocitem text="File Menu" target="alwFile"/>
-                <tocitem text="Edit Menu" target="alwEdit"/> 
-                <tocitem text="View Menu" target="alwView"/> 
+                <tocitem text="Edit Menu" target="alwEdit"/>
+				<tocitem text="Select Menu" target="alwSelect"/> 
+                <tocitem text="View Menu" target="alwView"/>
+				<tocitem text="Format Menu" target="alwFormat"/>
                 <tocitem text="Colour Menu" target="alwColour"/>
                 <tocitem text="Calculation Menu" target="alwCalc"/>
 		<tocitem text="Web Service Menu" target="wsMenu"/>