X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Fcalculations%2Fpairwise.html;h=10902530eb1b9cf12545f462b7906c34087c1080;hb=14d7fc7b354d68634fdb65c20ace15741a5b685f;hp=bf677e6cf2e815758c76b5935bf06753e8b1a432;hpb=427421de47dacacac55ac29deca78e2f0a1c5408;p=jalview.git

diff --git a/help/html/calculations/pairwise.html b/help/html/calculations/pairwise.html
index bf677e6..1090253 100755
--- a/help/html/calculations/pairwise.html
+++ b/help/html/calculations/pairwise.html
@@ -38,15 +38,21 @@
   <p>
     Gap open : 12 <br> Gap extend : 2
   </p>
-  <p>When you select the pairwise alignment option, a new window will
-    come up which displays the alignments in a text format, for example:</p>
-  <p style="font-family:'Lucida Console', monospace">
-    <pre>
-    FER1_SPIOL/5-13 TTMMGMAT<br/>
-                    |. .. ||<br/>
+  <p>When you select the pairwise alignment option, a new window
+    will come up which displays the alignments in a text format, for
+    example:</p>
+  <p>
+  <pre>
+    FER1_SPIOL/5-13 TTMMGMAT<br />
+                    |. .. ||<br />
     FER1_MESCR/5-15 TAALSGAT
-    </pre>shows the aligned sequences, where '|' links identical residues, and (for peptide) '.' links residues that have a positive PAM250 score.
-  <p>The window also shows information about the alignment such as alignment score, length and percentage identity between the sequences.</p>
-  <p>A button is also provided to allow you to view the sequences as an alignment.</p>
+    </pre>
+  shows the aligned sequences, where '|' links identical residues, and
+  (for peptide) '.' links residues that have a positive PAM250 score.
+  <p>The window also shows information about the alignment such as
+    alignment score, length and percentage identity between the
+    sequences.</p>
+  <p>A button is also provided to allow you to view the sequences as
+    an alignment.</p>
 </body>
 </html>