X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=94cbc654d5bd33382c67308396d3732066dc1f51;hb=c926361b2442081210826ee47b6f223a9e19434a;hp=e18e273bc6e63d17a8266460e4a4915b193850f3;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git
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@@ -1,18 +1,40 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+
+Removing Redundancy
+
+
+
+ Removing redundancy
+
+
+ Selecting the option in the Alignment window's Edit
+ menu or pressing 'CONTROL+D' brings up a dialog box
+ asking you to select a threshold. If the percentage identity between
+ the aligned positions of any two sequences in the visible alignment
+ exceeds this value, the shorter sequence is discarded.
+ Note: The redundancy calculation is done when the dialog
+ box is opened. For large numbers of sequences this can take a long
+ time as all pairs have to be compared.
+
+
+