X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=94cbc654d5bd33382c67308396d3732066dc1f51;hb=db098429f712e3cda729b937cd3f635482f96b52;hp=686b1df701ea58e4463de8861fb1179c317c1b5a;hpb=1693646e78fb0dddebcd94f8bef7e2acd3bdaae0;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 686b1df..94cbc65 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,10 +1,40 @@ - - -

Removing redundancy

-

Selecting this option brings up a window asking you to select a threshold. - If the percentage identity between two sequences exceeds this value one of the - sequences (the shorter) is discarded. The redundancy calculation is done when - the Apply button is pressed. For large numbers of sequences this can take a - long time as all pairs have to be compared.

- - + + + +Removing Redundancy + + +

+ Removing redundancy +

+

+ Selecting the option in the Alignment window's Edit + menu or pressing 'CONTROL+D' brings up a dialog box + asking you to select a threshold. If the percentage identity between + the aligned positions of any two sequences in the visible alignment + exceeds this value, the shorter sequence is discarded.
+ Note: The redundancy calculation is done when the dialog + box is opened. For large numbers of sequences this can take a long + time as all pairs have to be compared. +

+ +