X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Fcalculations%2Fstructureconsensus.html;h=fd47dc0e4dec1abe1860b911f835ebec7c7e443f;hb=c650abb5e4572557e1d175ecc72a0f7c8892202e;hp=c194a53b2dbedede99657dbf12cb94be42b53f79;hpb=35738b40f315d0f619116f4e0b23e9a8ebf141d2;p=jalview.git diff --git a/help/html/calculations/structureconsensus.html b/help/html/calculations/structureconsensus.html index c194a53..fd47dc0 100755 --- a/help/html/calculations/structureconsensus.html +++ b/help/html/calculations/structureconsensus.html @@ -27,12 +27,13 @@ Alignment RNA Structure Consensus Annotation
-The RNA structure consensus displayed below the alignment gives the - percentage of valid base pairs per column for the first secondary - structure annotation shown on the annotation panel. These values are - shown as a histogram labeled "StrucConsensus", where a - symbol below each bar indicates whether the majority of base pairs - are:
The RNA structure consensus displayed below the alignment gives + the percentage of valid base pairs per column for the first + secondary structure annotation shown on the annotation panel. These + values are shown as a histogram labeled "StrucConsensus", + where a symbol below each bar indicates whether the majority of base + pairs are: +
Mousing over the column gives the fraction of pairs classified as Watson-Crick, Canonical or Invalid.
-By default
- this calculation includes gaps in columns. You can choose to ignore
- gaps in the calculation by right clicking on the label
- "StrucConsensus" to the left of the structure consensus bar
- chart.
-
+
+ By default this calculation includes gaps in columns. You can choose
+ to ignore gaps in the calculation by right clicking on the label
+ "StrucConsensus" to the left of the structure consensus
+ bar chart.
RNA Structure logo
Right-clicking on the
label allows you to enable the structure logo. It is very similar to