X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Fcalculations%2Ftreeviewer.html;h=3d6245e666e1a27caa229b453478f4a1c35348f9;hb=480d7b96f089281a3caf77d2a4e5adec09dc5bfa;hp=c91fe1b5085a987bc86906a526567595de3ba726;hpb=5febb187ce19a3b928d52391e1b515ff40d62c0e;p=jalview.git diff --git a/help/html/calculations/treeviewer.html b/help/html/calculations/treeviewer.html index c91fe1b..3d6245e 100755 --- a/help/html/calculations/treeviewer.html +++ b/help/html/calculations/treeviewer.html @@ -28,12 +28,11 @@
The tree viewing window is opened when a tree has been calculated from an alignment, or imported via a file or web - service. It includes menus for controlling - layout and file and figure creation, and enables various selection - and colouring operations on the associated sequences in the - alignment. + href="tree.html">calculated from an alignment, or + imported via a file or web service. It includes menus + for controlling layout and file and figure creation, and enables + various selection and colouring operations on the associated + sequences in the alignment.
Selecting Sequence Leaf Nodes
@@ -95,23 +94,24 @@
tree is rendered and labeled:
The tree layout will be scaled to fit in the display window. - You may need to reduce the font size to minimise the leaf label - overlap when this option is selected.
The tree layout will be scaled to fit in the display + window. You may need to reduce the font size to minimise the + leaf label overlap when this option is selected.
+
Brings up a dialog box to set the font size for the leaf names. n is the current font size.
Labels each branch or leaf with its associated branch length.
Labels each branch or leaf with its associated branch + length.
Labels each branch or leaf with its associated bootstrap +
Labels each branch or leaf with its associated bootstrap value.
Toggles the display of a '*' at the beginning of a leaf label - to indicate that there is no sequence corresponding to that leaf - in the associated alignment.
Toggles the display of a '*' at the beginning of a leaf + label to indicate that there is no sequence corresponding to + that leaf in the associated alignment.
Sorts any associated alignment views using the current tree. (Only
@@ -120,10 +120,9 @@
Only visible when there are multiple views of the same alignment to show and edit which
- alignment views are associated with the leaves of the displayed
- tree.
+ href="../features/multipleViews.html">multiple
+ views of the same alignment to show and edit which alignment
+ views are associated with the leaves of the displayed tree.