X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=5eacca90c620d9c7f1786a578153955931622b4e;hb=5720f2cea034f014f366886b3cb9a170a909e988;hp=ae999ee138c53e4481e62cf35b1ff57ca6d949e7;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git
diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html
index ae999ee..5eacca9 100755
--- a/help/html/colourSchemes/user.html
+++ b/help/html/colourSchemes/user.html
@@ -7,34 +7,45 @@
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
--->
+ -->
User Defined Colours
-User Defined Colours
-
+User Defined Colours
+
You may define any number of new colour schemes, each with a unique name.
- Each of the residues in a new colour scheme may be assigned a new user defined
- colour.
-
- Click "Apply" or "OK" to set your new colours on the active
- alignment window.
-Click "Cancel" to undo your changes if you pressed the "Apply"
- button.
-
- If you save your colour scheme with a unique name the colour scheme name will
- be added to the "Colour" menu on each new alignment window.
+ Each of the residues in a colour scheme may be assigned any chosen colour.
+ Select one or more residues, then select the desired colour.
+ Use Ctrl-click to select multiple residues, or click then Shift-click to select a block.
+ Note that the currently selected buttons are highlighted by a lighter text colour.
+
+ The Case Sensitive option allows you to choose distinct colours for upper and
+ lower case residue codes.
+
+ Click Apply or OK to set your new colours on the active
+ alignment window.
+ Click Cancel to undo your changes if you pressed the Apply
+ button.
+
+ If you save your colour scheme with a unique name, the colour scheme name will
+ be added to the Colour menu on each new alignment window.
Any saved colour schemes will be automatically loaded the next time you use
- Jalview.
+ Jalview.
+
+ Note: the screenshot shows the appearance when running Java version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour chooser is
+ currently supported (for reasons of available screen space).
+