X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Ffeatures%2Fannotation.html;h=a036bd52b0c1f8a9a836978aea0fbdce00436568;hb=2fec1f5de1ec639826d84b7e20c19b37c2a98d55;hp=a6c62df18c93873e451dbb30dda9b2ddb30e4820;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git
diff --git a/help/html/features/annotation.html b/help/html/features/annotation.html
index a6c62df..a036bd5 100755
--- a/help/html/features/annotation.html
+++ b/help/html/features/annotation.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
Alignment Annotation
Alignment Annotation
@@ -36,6 +39,15 @@ and symbolic annotations can be added to an alignment via an Annotations File dragged into the
alignment window or loaded from the alignment's file menu.
+Sequence Reference Annotation
+
+
+ Sequence reference annotation is created from 3D structure
+ data, and from the results of sequence based prediction of
+ secondary structure and disordered region
+ prediction methods.
+
Interactive Alignment Annotation
Annotation rows are added using the Annotation Label
@@ -43,16 +55,23 @@ menu, which is obtained by clicking anywhere on the annotation row labels
area (below the sequence ID area).
- - Add New Row
+ - Add New Row
Adds a new, named annotation row (a dialog box will pop up for you to
enter the label for the new row).
- - Hide Row
+ - Edit Label/Description
+ This opens a dialog where you can change the name (displayed label), or the description
+ (as shown on the label tooltip) of the clicked annotation.
+ - Hide This Row
Hides the annotation row whose label was clicked in order to bring up
the menu.
- - Delete Row
+ - Hide All <label>
+ Hides all annotation rows whose label matches the one clicked.
+ (This option is only shown for annotations that relate to individual sequences,
+ not for whole alignment annotations. Since Jalview 2.8.2.)
+ - Delete This Row
Deletes the annotation row whose label was clicked in order to bring up
the menu.
- - Show All Hidden Rows
+ - Show All Hidden Rows
Shows all hidden annotation rows.
- Export Annotation (Application only)
Annotations can be saved to file or output to a text window in either the