X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Ffeatures%2Fclarguments.html;h=cf444a1265ff4fc1ed73c98595b21e2abb77f017;hb=9a0f8bd63ac90b6afad56e321a7556be3cfabd49;hp=8d6a4d893e2ed87043a8b9831e53b5303a6e98c0;hpb=79c34bea5d18899696e681e34eebd1c33fc1683b;p=jalview.git diff --git a/help/html/features/clarguments.html b/help/html/features/clarguments.html index 8d6a4d8..cf444a1 100644 --- a/help/html/features/clarguments.html +++ b/help/html/features/clarguments.html @@ -48,14 +48,14 @@
Run Jalview without User Interface
- +
-tree FILE
@@ -91,16 +91,18 @@
-dasserver nickname=URL
-
Add and enable a das server with given +
Add and enable a DAS server with given nickname (alphanumeric or underscores only) for retrieval of features - for all alignments
+ for all alignments
+ Sources that also support the sequence command may be specified by prepending the URL with 'sequence:'
+ e.g. sequence:http://localdas.somewhere.org/das/source
-fetchfrom nickname
-
Query nickname for features for the alignments +
Query a DAS source called nickname for features for the alignments and display them