The top section of the dialog box lists all the sequence feature groups, along with a tickbox for each that controls whether its features are displayed. The table in the middle lists all the features in the -currently selected groups, along with their display colour and whether +currently selected groups, along with their display style and whether they are currently being displayed (only the ticked features and groups -are displayed). You can change the colour used -for a feature in the associated alignment by clicking on its colour box.
+are displayed). You can change the colour or +shading style used for a feature in the associated alignment by clicking +on its colour box.Feature settings pop-up menu
Right-click on a feature to open a pop-up menu that
allows you to sort the alignment or current selection using that feature
-type (see below), or create a feature
-colourscheme based on either the scores associated with that feature or
-from the feature's description (e.g. to distinguish different names
-associated with a DOMAIN feature).
Ordering alignment by features
The 'Seq Sort by Score' and 'Seq Sort by Density' buttons will sort the
alignment based on the average score or total number of currently active