X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Ffeatures%2Ffeaturesettings.html;h=3d7c944b864b78c32f40afa078e26db841489b10;hb=806c9dc4a3d841fe36e7d17ab45d783a9fc95f26;hp=b7738cdceb560722ec8d878c14d842d478f5c378;hpb=3a1bdbfd5b5cdded80aa5087d897107784f7cf2a;p=jalview.git diff --git a/help/html/features/featuresettings.html b/help/html/features/featuresettings.html index b7738cd..3d7c944 100755 --- a/help/html/features/featuresettings.html +++ b/help/html/features/featuresettings.html @@ -72,23 +72,29 @@
Feature settings pop-up menu
Right-click
- on a feature to open a pop-up menu that allows you to
Features may be highlighted - with either a single colour or a feature - colourscheme based on either the scores associated with that - feature or from the feature's description (e.g. to distinguish - different names associated with a DOMAIN feature). + on a feature to open a pop-up menu that allows you to +
+ Features may be highlighted with either a single colour or a feature colourscheme based on + either the scores associated with that feature or from the feature's + description (e.g. to distinguish different names associated with a + DOMAIN feature).
- Ordering alignment by features
The 'Seq
- Sort by Score' and 'Seq Sort by Density' buttons will sort the
- alignment based on the average score or total number of currently
- active features and groups on each sequence. To order the alignment
- using a specific feature type, use the sort by .. entries
- in the pop-up menu for that type.
Feature sorting
- and graduated feature colouring were introduced in Jalview 2.5
+ Ordering alignment by
+ features
The 'Seq Sort by Score' and 'Seq Sort by
+ Density' buttons will sort the alignment based on the average score
+ or total number of currently active features and groups on each
+ sequence. To order the alignment using a specific feature type, use
+ the sort by .. entries in the pop-up menu for that type.
+ Feature sorting and graduated feature colouring were
+ introduced in Jalview 2.5
@@ -112,11 +118,11 @@ ordering based on the average length of each feature type.
- The transparency slider setting controls the visibility - of features rendered below other features. Reducing the transparency - will mean that features at the top of the list can obscure features - lower down, and increasing it allows the user to 'see through' the - upper layers of a set of features. + The transparency slider setting controls + the visibility of features rendered below other features. Reducing + the transparency will mean that features at the top of the list can + obscure features lower down, and increasing it allows the user to + 'see through' the upper layers of a set of features.
You can save all features, with their