X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Ffeatures%2Fgroovy.html;h=ead44369ef3f87aa2d19368b9056f2611a5880ac;hb=b7b29fb6c0b015ac4798ec4718ab0cfbdd79b20a;hp=d9bf76eec157c6a0f750a8b0189049495736e03c;hpb=e1f743ce6752c9182e2ea38928fc6aedf150ec42;p=jalview.git

diff --git a/help/html/features/groovy.html b/help/html/features/groovy.html
index d9bf76e..ead4436 100644
--- a/help/html/features/groovy.html
+++ b/help/html/features/groovy.html
@@ -111,6 +111,15 @@ print currentAlFrame.getTitle();</pre>
       href="../groovy/featuresCounter.html">featuresCounter.groovy</a>
     example for more information.
   </p>
+  <p><a name="groovyColours"/>
+    <em>Creating custom colourschemes</em><br/>
+    You can create your own alignment colourschemes with a groovy script. We've provided two examples:<br/>
+    <ul>
+    <li><a href="http://www.jalview.org/examples/groovy/colourConserved.groovy">colourConserved.groovy</a> creates an 'Conserved' colourscheme - similar to the classic <a href="http://www.nrbsc.org/old/gfx/genedoc/">GeneDOC</a> shading model.</li>
+    <li><a href="http://www.jalview.org/examples/groovy/colourUnconserved.groovy">colourUnconserved.groovy</a> creates an 'Unconserved' colourscheme, where any unconserved residues are coloured pink.</li>
+    
+    </ul>
+  </p>
 
 </body>
 </html>