X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Ffeatures%2Fjmol.html;h=c81fcc39fdb4550f8e4aa07438c64034b46e03db;hb=4f9d1e48b9d0231de697b36971311e4908490762;hp=b3c35704691486c065b89aa41c193be6aa21606c;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git diff --git a/help/html/features/jmol.html b/help/html/features/jmol.html index b3c3570..c81fcc3 100644 --- a/help/html/features/jmol.html +++ b/help/html/features/jmol.html @@ -1,22 +1,24 @@ + -->
The Jmol PDB Viewer
Since Jalview 2.3, Jmol has been integrated into Jalview for interactively viewing structures -opened by selecting the "Structure→View PDB -entry:" option in the sequence +opened by entries in the "Structure" submenu in the sequence id pop-up menu (if you can't see this, then you need to associate a PDB structure with the sequence). Jmol is available from the Jalview desktop and should also run in the JalviewLite applet, providing the browser supports Java 1.5. If Jmol is not available, then the original internal pdb viewer will be used as a fallback.
+Superposing structures based
on their aligned sequences
If several structures are available on the alignment, you may add
@@ -58,7 +79,7 @@ atoms in the displayed structures.
-
Action | Windows | @@ -141,7 +162,7 @@ be measured from it to any other atom in the structure.