X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Findex.html;h=62b46a905c1bd2b4006c14fd44dbcfe0ef3d9f73;hb=b1e2aea95b3839a1a53f809c579666075cd3d348;hp=460c5b9be9c9e20936e0c305ebba15371388f4e9;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git diff --git a/help/html/index.html b/help/html/index.html index 460c5b9..62b46a9 100755 --- a/help/html/index.html +++ b/help/html/index.html @@ -1,15 +1,102 @@ - - -
- Jalview
- Documentation
-JalView (1999) is a fast Java multiple alignment editor and analysis tool. It -features many of the functions of AMAS, for the analysis of sub-families and the -prediction of functional sites, but is fully interactive. - -
If you use JalView in your work, please cite the bioinformatics paper:
-Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview - Java Alignment Editor", Bioinformatics, 12, 426-7.
- - + + + ++ Welcome to Jalview's built in documentation. +
+Here are some good places to start:
++ For more information, you might also want to take a look at the + documentation section of the Jalview website (http://www.jalview.org/about/documentation). +
++ If you are using the Jalview Desktop application and are looking for + something specific, then try the search box (next to the print + icon). If you're already viewing this in your web browser, then + google the online version of these pages. If you don't find what you + are looking for, or want to report a bug or make a feature request, + then get in contact over at http://www.jalview.org/community +
+ +
+ Citing Jalview
If you use Jalview in your
+ work, please cite the Jalview 2 paper in Bioinformatics:
+
+ Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton,
+ G.J (2009),
"Jalview version 2: A Multiple Sequence
+ Alignment and Analysis Workbench,"
Bioinformatics
+ 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033
+
+ The Jalview Authors
The following people
+ have contributed to Jalview's development:
+