X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Findex.html;h=d7633bc8d4171ef5e2e6708ce0146479430f8135;hb=12b928f827972f429471a5bf7a832fa634259a16;hp=adc1fa564fdeb4bf3efbeab692f808575c271af3;hpb=7a1a37e9a64522ace44262e6327538aa7688cebe;p=jalview.git

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 <br><br>
 <strong>Jalview Documentation</strong></font>
 <br><br>
-Jalview (2004) is a fast Java multiple alignment editor and analysis tool. It
+Jalview (2009) is a fast Java multiple alignment editor and analysis tool. It
 features many of the functions of <a href="http://www.compbio.dundee.ac.uk/Software/Amas/amas.html">AMAS</a>,
 for the analysis of sub-families and the prediction of functional sites, but is
 fully interactive. (View the <a href="http://www.jalview.org">Jalview homepage</a>).
 <p></p>
-<p> If you use Jalview in your work, please cite the bioinformatics paper: </p>
-<p>Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview
-  Java Alignment Editor", Bioinformatics, 20, 426-7.</p>
+<p> If you use Jalview in your work, please cite the Jalview 2 paper in Bioinformatics: </p>
+<p>Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton, G.J (2009), <br>
+   &quot;Jalview version 2: A Multiple Sequence Alignment and Analysis Workbench,&quot;<br>
+   <em>Bioinformatics</em> <strong>25</strong> (9) 1189-1191 doi: 10.1093/bioinformatics/btp033
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