X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Fmenus%2Falwcolour.html;h=2ad79d591cea6b658056894c280d5dfe08843d8f;hb=c2214808f64b811a25cec10399dcff38db0c592c;hp=4d2816342a4c636f61101dc08371645423fbc8f3;hpb=f902741a45fba3856958b893e37c74344d397a60;p=jalview.git diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html index 4d281634..2ad79d5 100755 --- a/help/html/menus/alwcolour.html +++ b/help/html/menus/alwcolour.html @@ -1,39 +1,69 @@ - -
Alignment Window Colour Menu
--- - + + +-
-- Apply Colour To All Groups
-
- If this is selected, any changes made to the background colour - will be applied to all currently defined groups.
-- Colour Scheme options: None, ClustalX, Blosum62 Score, Percentage Identity, Zappo, Taylor, - Hydrophobicity, Helix Propensity, Strand Propensity, Turn Propensity, Buried - Index, Nucleotide, User Defined
-
- See colours for - a description of all colour schemes.
-- By Conservation
-
- See Colouring - by Conservation.
-- Modify Conservation Threshold
-
- Use this to display the conservation threshold slider window. - Useful if the window has been closed, or if the 'by - conservation' option appears to be doing nothing!- Above Identity Threshold
-
- See Above Percentage - Identity.
-- Modify Identity Threshold
-
- Use this to set the threshold value for colouring above Identity. - Useful if the window has been closed.
Alignment Window Colour Menu
+