X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Fmenus%2FpopupMenu.html;h=e28c7e1c88a87978bd7f4bc248ee9152801f534b;hb=c2214808f64b811a25cec10399dcff38db0c592c;hp=8c75586e6e9caab5b3173b400585458fca6db141;hpb=3f2b8374416a4e6388984481ddcddd6e61c458f5;p=jalview.git
diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index 8c75586..e28c7e1 100755
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
Popup Menu
@@ -59,18 +62,22 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
Create Sequence Feature...
Opens the dialog box for creating sequence features over the currently
selected region on each selected sequence.
- Group
- Group Operations
-
- - GroupThis is the first entry in the
- menu, and will display the currently selected group's
- name. Selecting it displays a window allowing the name and
- description for this group to be edited. Click OK to set the
- new name and decription, and cancel to leave the existing
- name and description unchanged.
+ - Create Group
+ This will define a new group from the current selection.
+
- Remove Group
This will undefine the selected group.
+ - Edit (New) Group
+ Group Editing Menu
Options in this menu modify
+ the name and display properties of the currently selected group, or
+ a new group defined using the current selection.
+
+ - Name: <Group> or Edit name and description
The first entry in the
+ menu displays the name for the currently selected group, if it has one. Selecting this option opens a window allowing the name and
+ description for this group to be edited. Click OK to set the
+ new name and decription, and cancel to leave the existing
+ name and description unchanged.
- Group Colour
Sets the colour
of the group.
@@ -143,11 +150,11 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
- From File
Load a PDB file from local disk which will be associated
with this sequence. This file will be used if the user subsequently
- clicks on "View PDB Structure" menu item.
+ clicks on "View Structure" menu item.
- Enter PDB id
Enter the PDB id from an input window. This PDB id will
be used by the service WSDBFetch, provided by the EBI, to fetch the
- PDB file if the user subsequently clicks on "View PDB Structure"
+ PDB file if the user subsequently clicks on its "View Structure"
menu item.
- Discover PDB ids
This will use the service WSDBFetch, provided by the
@@ -164,6 +171,24 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
href="../features/viewingpdbs.html">associated PDB structures.
If the sequence or alignment has RNA structure, then 2D RNA entries will also be present enabling you to open a linked view of the RNA structure in VARNA.
+ Other menu entries may also be shown if the current selection includes sequences with associated structure data:
+
+ - "Structure→View all N
+ structures
+ Opens a new window containing all structures associated
+ with the current selection, superposed according to the currently selected region of the alignment.
(This
+ capability was added in Jalview 2.7)
+
+ - "Structure→View all N
+ representative structures
+ Open a new window containing exactly one structure per
+ currently selected sequence.
+ (The View representative structures option was introduced in
+ Jalview 2.8.1)
+
+
-
+
+
Hide Sequences