X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Freleases.html;h=3eaf2343fcd7a82328f169d018d5225982f80802;hb=20a4d7ddb86ee996f2b6617a0470922b83354c35;hp=7ceebff34eab4f9744f385e751cccf7fd6148802;hpb=efffcd38913c0e67f670a66fb29c96e9cf1508b1;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 7ceebff..3eaf234 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -67,17 +67,160 @@ li:before {
+
+ |
+
+ |
+ |
+
+
+
+ -
+ DAS sequence retrieval and annotation capabilities removed from the Jalview Desktop
+
+
+ |
+
+
+ |
+
+ |
+
+
+
+ -
+ Default memory for Jalview webstart and
+ InstallAnywhere increased to 1G.
+
+ -
+ Hidden sequence markers and representative
+ sequence bolding included when exporting alignment as EPS,
+ SVG, PNG or HTML. Display is configured via the
+ Format menu, or for command-line use via a jalview
+ properties file.
+
+ -
+ Ensembl client updated to Version 7 REST
+ API and sequence data now imported as JSON.
+
+ -
+ Change in recommended way of starting
+ Jalview via a Java command line: add jars in lib directory
+ to CLASSPATH, rather than via the deprecated java.ext.dirs
+ property.
+
+
+ Development
+
+ -
+ Support added to execute test suite
+ instrumented with Open
+ Clover
+
+
+ |
+
+
+
+ -
+ Poorly scaled bar in quality annotation
+ row shown in Feredoxin Structure alignment view of example
+ alignment.
+
+ -
+ Annotation obscures sequences if lots of
+ annotation displayed.
+
+ -
+ Group conservation/consensus not shown
+ for newly created group when 'Apply to all groups'
+ selected
+
+ -
+ Corrupted display when switching to
+ wrapped mode when sequence panel's vertical scrollbar is
+ visible.
+
+ -
+ Alignment is black in exported EPS file
+ when sequences are selected in exported view.
+
+ -
+ Groups with different coloured borders
+ aren't rendered with correct colour.
+
+ -
+ Jalview could hang when importing certain
+ types of knotted RNA secondary structure.
+
+ -
+ Sequence highlight and selection in
+ trimmed VARNA 2D structure is incorrect for sequences that
+ do not start at 1.
+
+ -
+ '.' inserted into RNA secondary structure
+ annotation when columns are inserted into an alignment,
+ and when exporting as Stockholm flatfile.
+
+ -
+ Jalview annotation rows containing upper
+ and lower-case 'E' and 'H' do not automatically get
+ treated as RNA secondary structure.
+
+ -
+ .jvp should be used as default extension
+ (not .jar) when saving a jalview project file.
+
+ -
+ Mac Users: closing a window correctly
+ transfers focus to previous window on OSX
+
+
+ Java 10 Issues Resolved
+
+ -
+ OSX - Can't save new files via the File
+ or export menus by typing in a name into the Save dialog
+ box.
+
+ -
+ Jalview now uses patched version
+ of the VAqua5
+ 'look and feel' which has improved compatibility with the
+ latest version of OSX.
+
+
+ |
+
|
|
-
+ Use HGVS nomenclature for variant
+ annotation retrieved from Uniprot
+
+ -
Windows File Shortcuts can be dragged
onto the Jalview Desktop
@@ -88,7 +231,7 @@ li:before {
-
Cannot import features with multiple
- variant elements
+ variant elements (blocks import of some Uniprot records)
-
Clustal files with sequence positions in
@@ -99,12 +242,16 @@ li:before {
not alignment area in exported graphic
-
+ F2/Keyboard mode edits work when Overview
+ window has input focus
+
+ -
Annotation panel set too high when
- annotation added to view
+ annotation added to view (Windows)
-
- F2/Keyboard mode edits work when Overview
- window has input focus
+ Jalview Desktop is slow to start up when
+ network connectivity is poor
-
Drag URL from chrome, firefox, IE to
|