X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Freleases.html;h=92af37720f38fd1b721cc6ef4b2609b8d68f0a50;hb=b1e2aea95b3839a1a53f809c579666075cd3d348;hp=995199a6809d0e950179868219c95ea7e9f4ee87;hpb=2a27ba6c3c4a450f17eae24c592a565a62c1821f;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index 995199a..92af377 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -93,6 +93,8 @@ li:before {
             <li><!-- JAL-2790 -->'Cancel' button in progress bar for JABAWS AACon, RNAAliFold and Disorder prediction jobs
             </li>
             
+            <li><!-- JAL-2617 -->Stop codons are excluded in CDS/Protein view from Ensembl locus cross-references</li>
+            <li><!-- JAL-2685 -->Start/End limits are shown in Pairwise Alignment report</li>
           </ul>
           <ul><li>Example groovy script for generating a matrix of percent identity scores for current alignment.</li></ul>
           <em>Testing and Deployment</em>
@@ -104,7 +106,8 @@ li:before {
           <ul>
             <li><!-- JAL-2643 -->Pressing tab after updating the colour threshold text field doesn't trigger an update to the alignment view</li>
             <li><!-- JAL-2682 -->Race condition when parsing sequence ID strings in parallel</li>
-            <li><!-- JAL-2608 -->Overview windows are also closed when alignment window is closed</li> 
+            <li><!-- JAL-2608 -->Overview windows are also closed when alignment window is closed</li>
+            <li><!-- JAL-2548 -->Export of features doesn't always respect group visibility</li> 
           </ul>
           <em>Desktop</em>
           <ul>
@@ -114,6 +117,7 @@ li:before {
             <li><!-- JAL-2757 -->Can't edit the query after the server error warning icon is shown in Uniprot and PDB Free Text Search Dialogs
             </li> 
             <li><!-- JAL-2253 -->Slow EnsemblGenome ID lookup</li>
+            <li><!-- JAL-2529 -->Revised Ensembl REST API CDNA query</li>
             <li><!-- JAL-2739 -->Hidden column marker in last column not rendered when switching back from Wrapped to normal view</li> 
             <li><!-- JAL-2768 -->Annotation display corrupted when scrolling right in unwapped alignment view</li> 
             <li><!-- JAL-2542 -->Existing features on subsequence incorrectly relocated when full sequence retrieved from database</li> 
@@ -125,11 +129,20 @@ li:before {
             <li><!-- JAL-1900,JAL-1625 -->Unable to minimise windows within the Jalview desktop on OSX</li>
             <li><!-- JAL-2667 -->Mouse wheel doesn't scroll vertically when in wrapped alignment mode</li>
             <li><!-- JAL-2636 -->Scale mark not shown when close to right hand end of alignment</li>
+            <li><!-- JAL-2684 -->Pairwise alignment only aligns selected regions of each selected sequence</li>
+            <li><!-- JAL-2973 -->Alignment ruler height set incorrectly after canceling the Alignment Window's Font dialog</li>
+            <li><!-- JAL-2036 -->Show cross-references not enabled after restoring project until a new view is created</li>           
            </ul>
           <strong><em>Applet</em></strong><br/>
            <ul>
             <li><!-- JAL-2687 -->Concurrent modification exception when closing alignment panel</li> 
           </ul>
+          <strong><em>BioJSON</em></strong><br/>
+          <ul>
+          <li>
+            <!-- JAL-2546 -->BioJSON export does not preserve non-positional features
+          </li>
+          </ul>
           </div>
       </td>
     </tr>