X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Freleases.html;h=92cc453223be92895a18ae464df40223b7620b56;hb=95e0d29563438e76f0908a0eb8b263ab5d359065;hp=3d20be5986ed6b0d3ec1d335d63aa59e3753b266;hpb=3f3f50865b2c7459cb58801d66378001b2e653ac;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index 3d20be5..92cc453 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -1,6 +1,6 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
  * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
@@ -34,29 +34,94 @@
 		</td>
 	</tr>
 	<tr>
+	    <td>
+		<div align="center"><strong><a name="Jalview2.6.1">2.6.1</a></strong><br>
+		<em>15/11/2010</em></div>
+		</td>
+		<td><em>Application</em>
+		<ul>
+	<li>New warning dialog when the Jalview Desktop cannot contact web services</li>
+    <li>JABA service parameters for a preset are shown in service job window</li>
+    <li>JABA Service menu entries reworded</li>
+</ul>
+		</td>
+		<td>
+		<ul>
+		    <li>Modeller PIR IO broken - cannot correctly import a pir file emitted by jalview</li>
+<li>Existing feature settings transferred to new alignment view created from cut'n'paste</li>
+<li>Improved test for mixed amino/nucleotide chains when parsing PDB files</li>
+<li>Consensus and conservation annotation rows occasionally become blank for all new windows</li>
+<li>Exception raised when right clicking above sequences in wrapped view mode</li>
+		</ul>
+		<em>Application</em>
+		<ul>
+	<li>multiple multiply aligned structure views cause cpu usage to hit 100% and computer to hang</li>
+    <li>Web Service parameter layout breaks for long user parameter names</li>
+    <li>Jaba service discovery hangs desktop if Jaba server is down</li>
+    </ul>
+    	</td>
+	</tr>
+	<tr>
 		<td>
 		<div align="center"><strong><a name="Jalview2.6">2.6</a></strong><br>
-		<em>X/7/2010</em></div>
+		<em>26/9/2010</em></div>
 		</td>
-		<td>
+		<td><em>Application</em>
 		<ul>
-			<li>Changed minimum Java version required for Jalview<br>
-			When used with Jmol, JalviewLite needs at least Java 1.5<br>
-			The application needs at least 1.6.</li>
-			<li>Updated embedded Jmol to series 12.XX<br><strong>See note about use of applet with Jmol</strong></li>
-			
+			<li>Support for <strong>Ja</strong>va <strong>b</strong>ioinformatics
+			<strong>a</strong>nalysis <strong>w</strong>eb <strong>s</strong>ervices (JABAWS)</li>
+			<li>Web Services preference tab</li>
+			<li>Analysis parameters dialog box and user defined preferences</li>
+			<li>Improved speed and layout of Envision2 service menu</li>
+			<li>Superpose structures using associated sequence alignment</li>
+			<li>Export coordinates and projection as CSV from PCA viewer</li>
 		</ul>
 		<em>Applet</em>
 		<ul>
-			<li></li>
+			<li>enable javascript: execution by the applet via the link out
+			mechanism</li>
+		</ul>
+		<em>Other</em>
+		<ul>
+			<li>Updated the Jmol Jalview interface to work with Jmol series
+			12</li>
+			<li>The Jalview Desktop and JalviewLite applet now require Java
+			1.5</li>
+			<li>Allow Jalview feature colour specification for GFF sequence
+			annotation files</li>
+			<li>New 'colour by label' keword in jalview feature file type
+			colour specification</li>
+			<li>New Jalview Desktop Groovy API method that allows a script
+			to check if it being run in an interactive session or in a batch
+			operation from the jalview command line</li>
+		</ul>
+		</td>
+		<td>
+		<ul>
+			<li>clustalx colourscheme colours Ds preferentially when both
+			D+E are present in over 50% of the column</li>
 		</ul>
+
 		<em>Application</em>
 		<ul>
-			<li>Jalview 2 Web Services</li>
-			<li>Web Services configuration tab in preferences</li>
+			<li>typo in AlignmentFrame-&gt;View-&gt;Hide-&gt;all but
+			selected Regions menu item</li>
+			<li>sequence fetcher replaces ',' for ';' when the ',' is part
+			of a valid accession ID</li>
+			<li>fatal OOM if object retrieved by sequence fetcher runs out
+			of memory</li>
+			<li>unhandled Out of Memory Error when viewing pca analysis
+			results</li>
+			<li>InstallAnywhere builds fail to launch on OS X java 10.5
+			update 4 (due to apple Java 1.6 update)</li>
+			<li>Installanywhere Jalview silently fails to launch</li>
+		</ul>
+		<em>Applet</em>
+		<ul>
+			<li>Jalview.getFeatureGroups() raises an
+			ArrayIndexOutOfBoundsException if no feature groups are defined.</li>
 		</ul>
 		</td>
-		<td></td>
 	</tr>
 	<tr>
 		<td>
