X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2Freleases.html;h=c4a8bab9d1fd1e9905f225b33c0955a4f23120ca;hb=6c96743ff6c65895e4b96523d0e3d05f6dc3cb01;hp=2b2184b9e92d986363c6df36423f20ed2bb00922;hpb=e75cf5f98eb75a8b23056c73e198ca9e75b8d6c8;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 2b2184b..c4a8bab 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -47,17 +47,28 @@
|
General
+ - Alignment ruler shows positions relative to reference sequence
Application
+
+
+
+
+
+ - Show residue labels in Chimera when mousing over sequences in Jalview
- Support for reverse-complement coding regions in ENA and EMBL
- Upgrade to EMBL XML 1.2 for ENA record retrieval
+ - New 'execute Groovy script' option in an alignment window's Calculate menu
+ - Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode
+ - Store/restore reference sequence in Jalview projects
+
Applet
@@ -73,6 +84,8 @@
- Tidied up links in help file table of contents
- Feature based tree calculation not shown for DNA alignments
- Hidden columns ignored during feature based tree calculation
+ - Alignment view stops updating when show unconserved enabled for group on alignment
+ - Cannot insert gaps into sequence when set as reference
Application
@@ -82,6 +95,10 @@
URLs and links can imported by drag'n'drop on OSX webstart
InstallAnywhere distribution fails when launching Chimera
Jalview very slow to launch via webstart (also hotfix for 2.9.0b2)
+ Cannot save project when view has a reference sequence defined
+ Columns are suddenly selected in other alignments and views when revealing hidden columns
+ Hide columns not mirrored in complement view in a cDNA/Protein splitframe
+ Cannot save/restore representative sequence from project when only one sequence is represented
Applet
@@ -247,7 +264,7 @@
region export in flat file generation
Export alignment views for display with the BioJS MSAViewer
+ href="http://msa.biojs.net/">BioJS MSAViewer
Export scrollable SVG in HTML page
Optional embedding of BioJSON data when exporting
@@ -732,7 +749,7 @@
Certum to the Jalview
open source project).
- Jalview SRS links replaced by Uniprot and EBI-search
+ Jalview SRS links replaced by UniProt and EBI-search
Output in Stockholm format
Allow import of data from gzipped files
@@ -1087,8 +1104,8 @@
current built in colourscheme is saved as new scheme
AlignFrame->Save in application pops up save
dialog for valid filename/format
- Cannot view associated structure for Uniprot sequence
- PDB file association breaks for Uniprot sequence
+ Cannot view associated structure for UniProt sequence
+ PDB file association breaks for UniProt sequence
P37173
Associate PDB from file dialog does not tell you
which sequence is to be associated with the file
@@ -1663,7 +1680,7 @@
Save works when Jalview project is default format
Save as dialog opened if current alignment format is
not a valid output format
- Uniprot canonical names introduced for both das and
+ UniProt canonical names introduced for both das and
vamsas
Histidine should be midblue (not pink!) in Zappo
error messages passed up and output when data read
@@ -1692,7 +1709,7 @@
due to null pointer exceptions
Secondary structure lines are drawn starting from
first column of alignment
- Uniprot XML import updated for new schema release in
+ UniProt XML import updated for new schema release in
July 2008
Sequence feature to sequence ID match for Features
file is case-insensitive
@@ -1836,7 +1853,7 @@
Re-instated Zoom function for PCA
Sequence descriptions conserved in web service
analysis results
- Uniprot ID discoverer uses any word separated by
+ UniProt ID discoverer uses any word separated by
∣
WsDbFetch query/result association resolved
Tree leaf to sequence mapping improved
|