X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2FAACon.html;h=5cec67d69bde614d163a596d93cd60e9fc8e2798;hb=842713f26c299ec867320918a721ff5be9df7dbb;hp=5dd4472bde53549847d46bd3acf6d6d14d5f931e;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git diff --git a/help/html/webServices/AACon.html b/help/html/webServices/AACon.html index 5dd4472..5cec67d 100644 --- a/help/html/webServices/AACon.html +++ b/help/html/webServices/AACon.html @@ -30,13 +30,13 @@ The majority of these scores were described by Valdar in 2002 (Scoring residue conservation. Proteins: Structure, Function, and Genetics 43(2): 227-241. PubMed or available on the Valdar Group publications page), but the SMERFs score was - developed later and described by Manning et al. in 2008 (BMC Bioinformatics 2008, 9:51 doi:10.1186/1471-2105-9-51). + href="http://www.ncbi.nlm.nih.gov/pubmed/12112692">PubMed + or available on the Valdar + Group publications page), but the SMERFs score was developed later + and described by Manning et al. in 2008 (BMC + Bioinformatics 2008, 9:51 doi:10.1186/1471-2105-9-51).
Enabling and disabling AACon calculations
@@ -49,14 +49,13 @@
Configuring which AACon calculations are performed
The Web Services→Conservation→Change
AACon Settings ... menu entry will open a web services parameter dialog for the currently configured AACon
- server. Standard presets are provided for quick and more expensive
- conservation calculations, and parameters are also provided to
- change the way that SMERFS calculations are performed.
AACon
- settings for an alignment are saved in Jalview projects along with the latest calculation results.
+ href="webServicesParams.html">web services parameter
+ dialog for the currently configured AACon server. Standard presets
+ are provided for quick and more expensive conservation calculations,
+ and parameters are also provided to change the way that SMERFS
+ calculations are performed.
AACon settings for an
+ alignment are saved in Jalview
+ projects along with the latest calculation results.