X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Findex.html;fp=help%2Fhtml%2FwebServices%2Findex.html;h=9d139063440e8712581c6a2f2cf755990db72f69;hb=05c695da50cc7ac1bd759ed5c58b3d5d7a9d0085;hp=8e785dc30854890883ff12ddf1c420f103df2777;hpb=ba919533064dbf4c1f5d85aa78a54ee56b36e6dd;p=jalview.git
diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html
index 8e785dc..9d13906 100755
--- a/help/html/webServices/index.html
+++ b/help/html/webServices/index.html
@@ -36,9 +36,21 @@ bioinformatic data retrieval and analysis.
The Database Reference Fetcher
transfers database references from records available from DAS or the
public sequence databases.
- Jalview SOAP Web Services for sequence and alignment analysis
- are provided by the University of Dundee, and are available from the
- Alignment window's Web Service menu.
+ The Web Services menu in each alignment
+ window also provides access to the following:
+
+ - Jalview SOAP Web Services for sequence alignment and
+ secondary structure prediction based at the University of Dundee.
+ - Services for submitting IDs and sequences to external
+ bioinformatics services such as Envision2.
+ - Programs for multiple sequence alignment, made available via
+ Java Bioinformatic
+ Analysis Web Service (JABAWS) servers.
+
+ The Web Services Preference panel
+ controls the display and appearance of the submission and analysis
+ services in the Web Services menu.
+
Jalview's distributed computations are SOAP based services
@@ -47,12 +59,13 @@ programs. These services actually run on the cluster based in the School
of Life Sciences, University of Dundee, and are maintained by the Barton
group.
Envision2 Services
-Jalview 2.5 includes a client to enable the user to submit one or
-more sequences or sequence IDs to analysis workflows provided by the Since version 2.5, Jalview has included a client to enable the
+user to submit one or more sequences or sequence IDs to analysis
+workflows provided by the EnVision2 web
application. This allows Jalview users to easily access the EnCore
-network of databases and analysis services developed by members of ENFIN.
+network of databases and analysis services developed by ENFIN (www.enfin.org).
Web Service Dialog Box
@@ -78,28 +91,22 @@ permanently cancel the job, but this is only possible for some services.
Multiple Alignment with Fast Fourier Transforms - a highly accurate
and high throughput dna and amino acid alignment method, performing at
least as well as ClustalW and Muscle.
+ Other alignment methods are also available via JABAWS. For more information about a
+ particular service, see the documentation available via the web services parameter dialog box.
Secondary Structure Prediction
- JNet
- This is a front end to the existing JNet www server
allowing single sequence or profile based prediction.
-
+