X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Findex.html;h=6b5c5e1397a53215a67ad6bc074d386bbee4929f;hb=ddf3aca722d27da4bd2c58e9f0ab0909ba9639c0;hp=d90fa85bc13ae69e3c55b8f03220f8e17245f210;hpb=ac5cc638b08386985f91503c81b27263230046e3;p=jalview.git

diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html
index d90fa85..6b5c5e1 100755
--- a/help/html/webServices/index.html
+++ b/help/html/webServices/index.html
@@ -21,17 +21,33 @@
                   possible for some services.
                   </p>
                   <p>Current services:
-                  <ul>
-                  <li>ClustalW Multiple Alignment<br>
-                  The clustal W service remains one of the more popular Jalview features.
+                  <ul><a href="msaclient.html"><strong>Multiple
+                  Sequence Alignment Services</strong></a><ul>
+                  <li><a href="clustalw.html">ClustalW Multiple Alignment and re-alignment</a><br>
+                  The clustal W service remains one of the more
+                  popular Jalview features.
                   </li>
-                  <li>Muscle Multiple Alignment<br>
+                  <li><a href="muscle.html">Muscle Multiple Alignment</a><br>
                   High Quality and High Throughput multiple alignments of proteins. This
                   method can sometimes be more accurate than ClustalW when dealing with
                   diverse sets of sequences.
                   </li>
-                  <li>JNet Secondary Structure Prediction<br>
-                  <em>This is a front end to the existing JNet www server.</em>
+                  <li><a href="mafft.html">MAFFT</a><br>
+                  Multiple Alignment with Fast Fourier Transforms -
+                  a highly accurate and high throughput dna and amino
+                  acid alignment method, performing at least as well
+                  as ClustalW and Muscle.
+                  </li>
+                  </ul>                  
+                  </li>
+                  <li><strong>Secondary Structure Prediction</strong>
+                  <ul>
+                  <li><a href="jnet.html">JNet</a><br>This is a front end to the existing <a
+                  href="http://www.compbio.dundee.ac.uk/www-jpred/">JNet
+                  www server</a> allowing single sequence or profile
+                  based prediction.
+                  </li>
+                  </ul>
                   </li>
                   </ul>
                   </p>