X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Fjnet.html;h=29918d63634ed7e6bdc31da9f741b20c9dd4aed9;hb=e47d4dbf50727507632a3fe1c755e3141252ead7;hp=bfb11832f3e980656d9fb5fe09dc9654aa5f9e2b;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index bfb1183..29918d6 100755
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -1,21 +1,21 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
---!>
+-->
 <head>
 <title>JNet Secondary Structure Prediction</title>
 </head>
@@ -27,11 +27,10 @@ composition and similarity to sequences with known secondary structure.
 The JNet method uses several different neural networks and decides on
 the most likely prediction via a jury network. <br>
 <ul>
-	<li>
-	Cole C., Barber J.D. and Barton G.J. (2008) The Jpred 3 secondary structure prediction server
-	<em>Nucleic Acids Research</em> <strong>36</strong> W197-W201</li>
-	<li>
-	Cuff J. A and Barton G.J (1999) Application of enhanced
+	<li>Cole C., Barber J.D. and Barton G.J. (2008) The Jpred 3
+	secondary structure prediction server <em>Nucleic Acids Research</em> <strong>36</strong>
+	W197-W201</li>
+	<li>Cuff J. A and Barton G.J (1999) Application of enhanced
 	multiple sequence alignment profiles to improve protein secondary
 	structure prediction <em>Proteins</em> <strong>40</strong> 502-511</li>
 </ul>
@@ -108,5 +107,10 @@ The annotation bars below the alignment are as follows:
 	invoked to rationalise significantly different primary predictions.</em></li>
 </ul>
 </p>
+<em>As of Jalview 2.6, the Jnet service accessed accessed via the
+'Secondary structure prediction' submenu should be considered a legacy
+Jalview SOAP service, and will be replaced in the near future by a
+JABAWS Jnet service.</em>
+
 </body>
 </html>
