X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Fjnet.html;h=cf914d3656b2c9fc24d53479406ddb26f964e012;hb=6485409ae3787ad80b80692463511ca0d454957c;hp=a8727dbee1e32caef2f8538c0d7793fcdc209bb1;hpb=cee65885b13fc0f2d56c1f5df439be1df363e3b1;p=jalview.git
diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index a8727db..cf914d3 100755
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -1,4 +1,24 @@
+
JNet Secondary Structure Prediction
@@ -10,6 +30,9 @@ composition and similarity to sequences with known secondary structure.
The JNet method uses several different neural networks and decides on
the most likely prediction via a jury network.
+ - Cole C., Barber J.D. and Barton G.J. (2008) The Jpred 3
+ secondary structure prediction server Nucleic Acids Research 36
+ W197-W201
- Cuff J. A and Barton G.J (1999) Application of enhanced
multiple sequence alignment profiles to improve protein secondary
structure prediction Proteins 40 502-511
@@ -87,5 +110,15 @@ The annotation bars below the alignment are as follows:
invoked to rationalise significantly different primary predictions.
+ JNet annotation created in Jalview 2.8.2 and later versions
+ can be displayed on other alignments via the Add reference
+ annotation Sequence ID popup menu option.
+
+ As of Jalview 2.6, the Jnet service accessed accessed via the
+'Secondary structure prediction' submenu should be considered a legacy
+Jalview SOAP service, and will be replaced in the near future by a
+JPred4 Rest service.
+