X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Fmsaclient.html;h=2fbbdbcfb61a056fe94624304cd38bfa9af742c9;hb=1f84a89eddaa39d8277b0d520c2cfd6356cff020;hp=0d413fc698ae66cbf1e36f4da346a6d96b9284d3;hpb=0696cffbccbb537be78d9fc2410589adbcd7be35;p=jalview.git
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@@ -1,59 +1,93 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see
Multiple sequence alignment services can be accessed from either -the Alignment or the JABAWS Alignment -submenu of the Alignment Window's Web Service menu. -When an entry from one of these menus is selected, either the currently -selected residues, or the whole sequence set (if there is no selection -or only one sequence is selected) will be submitted for multiple -sequence alignment.
-There are two kinds of multiple sequence alignment operations -available: -
Multiple Alignments of Sequences with hidden
-columns
-Multiple alignment services are 'column separable' analysis operations.
-If the input contains hidden
-columns then each visible segment of the input sequence set will be
-submitted for alignment separately, and the results concatenated (with
-the hidden regions preserved) once all alignment functions have
-completed. Each sub-job's state is reported in its own tab:
-
-
+ Multiple sequence alignment services are accessed from the Alignment + submenu of the Alignment Window's Web Service menu. + When an entry from one of these menus is selected, either the + currently selected residues, or the whole sequence set (if there is + no selection or only one sequence is selected) will be submitted for + multiple sequence alignment. +
+There are two kinds of multiple sequence alignment operations + available: +
+ Alignment programs supported by JABAWS.
Versions
+ shown are those bundled with JABAWS 2.01 - if you are using a
+ different server, check its home page to find out which versions are
+ provided.
+
+ Multiple Alignments of Sequences with hidden
+ columns
Multiple alignment services are 'column
+ separable' analysis operations. If the input contains hidden columns then
+ each visible segment of the input sequence set will be submitted for
+ alignment separately, and the results concatenated (with the hidden
+ regions preserved) once all alignment functions have completed. Each
+ sub-job's state is reported in its own tab:
+
+