X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Fmsaclient.html;h=2fbbdbcfb61a056fe94624304cd38bfa9af742c9;hb=1f84a89eddaa39d8277b0d520c2cfd6356cff020;hp=de12faa7cbaa311ed0ed07b4c3a38f9d4fdc28d5;hpb=ab7509436f09413b122dace2ecd6692f6f06d347;p=jalview.git
diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html
index de12faa..2fbbdbc 100644
--- a/help/html/webServices/msaclient.html
+++ b/help/html/webServices/msaclient.html
@@ -1,75 +1,93 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see
- Multiple sequence alignment services are accessed from the Alignment - submenu of the Alignment Window's Web Service menu. - When an entry from one of these menus is selected, either the - currently selected residues, or the whole sequence set (if there is no - selection or only one sequence is selected) will be submitted for - multiple sequence alignment. -
-There are two kinds of multiple sequence alignment operations -available: -
Alignment programs supported by JABAWS
+ Multiple sequence alignment services are accessed from the Alignment + submenu of the Alignment Window's Web Service menu. + When an entry from one of these menus is selected, either the + currently selected residues, or the whole sequence set (if there is + no selection or only one sequence is selected) will be submitted for + multiple sequence alignment. +
+There are two kinds of multiple sequence alignment operations + available: +
+ Alignment programs supported by JABAWS.
Versions
+ shown are those bundled with JABAWS 2.01 - if you are using a
+ different server, check its home page to find out which versions are
+ provided.
+
Multiple Alignments of Sequences with hidden
-columns
-Multiple alignment services are 'column separable' analysis operations.
-If the input contains hidden
-columns then each visible segment of the input sequence set will be
-submitted for alignment separately, and the results concatenated (with
-the hidden regions preserved) once all alignment functions have
-completed. Each sub-job's state is reported in its own tab:
-
-
+ Multiple Alignments of Sequences with hidden
+ columns
Multiple alignment services are 'column
+ separable' analysis operations. If the input contains hidden columns then
+ each visible segment of the input sequence set will be submitted for
+ alignment separately, and the results concatenated (with the hidden
+ regions preserved) once all alignment functions have completed. Each
+ sub-job's state is reported in its own tab:
+
+