X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Fmsaclient.html;h=626603673a2191bcd8eff4a811d54e1fb1f26ab0;hb=4aae950e66ed30fb4ac50dcbae4257bfda2518fc;hp=6fea43e7ea898cf48a9620a47359797748efc854;hpb=e3f4349374e532d0f9bb2bc163ff1783ca030fd6;p=jalview.git diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html index 6fea43e..6266036 100644 --- a/help/html/webServices/msaclient.html +++ b/help/html/webServices/msaclient.html @@ -1,38 +1,94 @@ - -
--Multiple sequence alignment services are accessed from the Web -Service→Alignment menu. When an entry from this menu is -selected, either the currently selected residues, or the whole -sequence set (if there is no selection or only one sequence is -selected) will be submitted for multiple sequence alignment. -
-There are two kinds of multiple sequence alignment operations -available:
-Multiple Alignments of Sequences with hidden columns
-Multiple alignment services are 'column separable' analysis
-operations. If the input contains hidden columns then each
-visible segment of the input sequence set will be submitted for
-alignment separately, and the results concatenated (with the hidden
-regions preserved) once all alignment functions have completed. Each
-sub-job's state is reported in its own tab:
-
+ Multiple sequence alignment services are accessed from the Alignment + submenu of the Alignment Window's Web Service menu. + When an entry from one of these menus is selected, either the + currently selected residues, or the whole sequence set (if there is + no selection or only one sequence is selected) will be submitted for + multiple sequence alignment. +
+There are two kinds of multiple sequence alignment operations + available: +
+ Alignment programs supported by JABAWS.
Versions
+ shown are those bundled with JABAWS 2.01 - if you are using a
+ different server, check its home page to find out which versions are
+ provided.
+
+ Multiple Alignments of Sequences with hidden
+ columns
Multiple alignment services are 'column
+ separable' analysis operations. If the input contains hidden columns then each visible segment of the input sequence
+ set will be submitted for alignment separately, and the results
+ concatenated (with the hidden regions preserved) once all alignment
+ functions have completed. Each sub-job's state is reported in its
+ own tab:
+
+