X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Fmsaclient.html;h=775eec89a63f1c6c63bb139b2e6075d969c1388b;hb=1b9fc500a75a38d7c4408d4b209384d5236911cc;hp=d35a28e66c0d26056cb9220865e1bd6e67b9fe06;hpb=05c695da50cc7ac1bd759ed5c58b3d5d7a9d0085;p=jalview.git diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html index d35a28e..775eec8 100644 --- a/help/html/webServices/msaclient.html +++ b/help/html/webServices/msaclient.html @@ -1,54 +1,75 @@
-Multiple sequence alignment services are accessed from the Web -Service→Alignment menu. When an entry from this menu is -selected, either the currently selected residues, or the whole -sequence set (if there is no selection or only one sequence is -selected) will be submitted for multiple sequence alignment. -
-There are two kinds of multiple sequence alignment operations -available:
+ Multiple sequence alignment services are accessed from the Alignment + submenu of the Alignment Window's Web Service menu. + When an entry from one of these menus is selected, either the + currently selected residues, or the whole sequence set (if there is no + selection or only one sequence is selected) will be submitted for + multiple sequence alignment. +
+There are two kinds of multiple sequence alignment operations +available: +
Alignment programs supported by JABAWS.
Versions shown are those bundled with JABAWS 2.01 - if you are using a different server, check its home page to find out which versions are provided.
Multiple Alignments of Sequences with hidden
+columns
+Multiple alignment services are 'column separable' analysis operations.
+If the input contains hidden
+columns then each visible segment of the input sequence set will be
+submitted for alignment separately, and the results concatenated (with
+the hidden regions preserved) once all alignment functions have
+completed. Each sub-job's state is reported in its own tab:
-Multiple Alignments of Sequences with hidden columns
-Multiple alignment services are 'column separable' analysis
-operations. If the input contains hidden columns then each
-visible segment of the input sequence set will be submitted for
-alignment separately, and the results concatenated (with the hidden
-regions preserved) once all alignment functions have completed. Each
-sub-job's state is reported in its own tab:
-