X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Fshmr.html;h=2d0c781b1d6aeae83b39564b5d44f7c074535bdc;hb=3b94f01f4edf56896ae3b5f0ce6cb4f1996e7bbc;hp=4051ac52f1aa252aa1c20f144d9e8c7f7b3b0dc1;hpb=ab7509436f09413b122dace2ecd6692f6f06d347;p=jalview.git

diff --git a/help/html/webServices/shmr.html b/help/html/webServices/shmr.html
index 4051ac5..2d0c781 100755
--- a/help/html/webServices/shmr.html
+++ b/help/html/webServices/shmr.html
@@ -1,14 +1,14 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -23,7 +23,7 @@
 	<strong>Functional residue analysis with Sequence Harmony and
 		Multi-Relief</strong>
 	<p>
-		The Sequence Harmony and Multi-Relief (SHMR) service (<a
+		The Multi-Harmony (a.k.a. Sequence Harmony and Multi-Relief, or SHMR) service (<a
 			href="#shmrref">Brandt, Feenstra and Heringa, 2010</a>) available
 		from the <em>Analysis</em> sub-menu of the alignment window's web
 		services menu provides a method for the identification of significant
@@ -44,7 +44,7 @@
 		of the alignment. Once submitted, a job progress window will display
 		status information about your job, including a URL which allows you to
 		visit the status page on the
-		<a href="http://www.ibi.vu.nl/programs/shmrwww/">IBIVU SHMR server</a>.
+		<a href="http://zeus.few.vu.nl/programs/shmrwww/">IBIVU SHMR server</a>.
 	</p>
 	<p>When the job is complete, Jalview will automatically open a new
 		window containing the alignment and groups that were submitted for
@@ -57,8 +57,8 @@
 			href="http://nar.oxfordjournals.org/cgi/content/abstract/gkq415">Nucleic
 			Acids Res. 38: W35-W40.</a> (<em>* joint first authors</em>)
 	<p>
-	<strong><em>Note:</em></strong> The SHMR service is implemented with Jalview's RESTful
-		web service client, first introduced in Jalview 2.7.
+	<strong><em>Note:</em></strong> The Multi-Harmony service is implemented with a prototype of Jalview's RESTful
+		web service client introduced in Jalview 2.7. A few bugs remain in this prototype, which we intend to fixed in version 2.7.1.
 	</ul>
 	</p>
 </body>
