X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhtml%2FwebServices%2Fshmr.html;h=803def74d38e32c858033aafcb8eccbd723cb496;hb=0c4b75bb2b3973218c9aa86f9bec19cd3dc5dcd5;hp=7de70c61740375f188da1a580355cbb901069b58;hpb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;p=jalview.git

diff --git a/help/html/webServices/shmr.html b/help/html/webServices/shmr.html
index 7de70c6..803def7 100755
--- a/help/html/webServices/shmr.html
+++ b/help/html/webServices/shmr.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -38,31 +38,29 @@
     a protein sequence multiple alignment that has been sub-divided into
     groups containing at least two non-identical protein sequences. An
     easy way to create groups is to use the built-in <a
-      href="../calculations/tree.html"
-    >neighbour-joining or UPGMA tree</a> routines to calculate a tree for
-    the alignment, and then click on the tree to subdivide the
-    alignment.
+      href="../calculations/tree.html">neighbour-joining or
+      UPGMA tree</a> routines to calculate a tree for the alignment, and
+    then click on the tree to subdivide the alignment.
   </p>
   <p>
     The SHMR service operates on the currently selected visible
     region(s) of the alignment. Once submitted, a job progress window
     will display status information about your job, including a URL
     which allows you to visit the status page on the <a
-      href="http://zeus.few.vu.nl/programs/shmrwww/"
-    >IBIVU SHMR server</a>.
+      href="http://zeus.few.vu.nl/programs/shmrwww/">IBIVU SHMR
+      server</a>.
   </p>
   <p>When the job is complete, Jalview will automatically open a new
     window containing the alignment and groups that were submitted for
     analysis, with additional histograms added portraying the SHMR
     scores for each column of the sub-grouped alignment.</p>
   <p>
-    If you use this service in your work, please cite :<br />
+    If you use this service in your work, please cite :<br /> 
     <a name="shmrref" /> Brandt, B.W.*, Feenstra, K.A*. and Heringa, J.
     (2010) Multi-Harmony: detecting functional specificity from sequence
     alignment. <a
-      href="http://nar.oxfordjournals.org/cgi/content/abstract/gkq415"
-    >Nucleic Acids Res. 38: W35-W40.</a> (<em>* joint first authors</em>)
-  
+      href="http://nar.oxfordjournals.org/cgi/content/abstract/gkq415">Nucleic
+      Acids Res. 38: W35-W40.</a> (<em>* joint first authors</em>)
   <p>
     <strong><em>Note:</em></strong> The Multi-Harmony service is
     implemented with a prototype of Jalview's RESTful web service client
